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AA-UTP [Aminoallyl UTP sodium salt] *4 mM in TE buffer* *CAS 112131-73-4*

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Physical properties
Molecular weight605.16
SolventWater
Storage, safety and handling
H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22
StorageFreeze (< -15 °C); Minimize light exposure
UNSPSC41116134

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CAS
112131-73-4
Molecular weight
605.16
The amine-modified uridine 5'-triphosphates (such as aminoallyl-UTP) can be used to produce amine-containing RNA by conventional enzymatic incorporation methods such as transcription, nick translation, random primed labeling, or PCR. Aminoallyl UTP can be readily incorporated into RNA through the conventional enzymatic incorporation techniques. The resulting amine-modified nucleic acids can then be labeled using any of amine-reactive fluorescent dyes, biotins and other amine-reactive reagents. The aminoallyl-modified nucleotides can be incorporated to extremely high and consistent levels compared to the tag-labeled uridine triphosphates that generally have higher stereo-hindrance. Subsequent reaction of the amine-modified nucleic acid with an excess of amine-reactive reagent achieves correspondingly high and consistent labeling efficiencies, regardless of the labeling reagent chosen. This two-step labeling method also eliminates the need to optimize an enzymatic reaction to accommodate different dye-modified nucleotides, which may incorporate at very different rates. This labeling method is widely used for both FISH probes and microarray-based experiments.

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Common stock solution preparation

Table 1. Volume of Water needed to reconstitute specific mass of AA-UTP [Aminoallyl UTP sodium salt] *4 mM in TE buffer* *CAS 112131-73-4* to given concentration. Note that volume is only for preparing stock solution. Refer to sample experimental protocol for appropriate experimental/physiological buffers.

0.1 mg0.5 mg1 mg5 mg10 mg
1 mM165.246 µL826.228 µL1.652 mL8.262 mL16.525 mL
5 mM33.049 µL165.246 µL330.491 µL1.652 mL3.305 mL
10 mM16.525 µL82.623 µL165.246 µL826.228 µL1.652 mL

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References


View all 3 references: Citation Explorer
Fluorescent labelling of cRNA for microarray applications
Authors: t Hoen PA, de Kort F, van Ommen GJ, den Dunnen JT.
Journal: Nucleic Acids Res (2003): e20
Aminomodified nucleobases: functionalized nucleoside triphosphates applicable for SELEX
Authors: Schoetzau T, Langner J, Moyroud E, Roehl I, Vonhoff S, Klussmann S.
Journal: Bioconjug Chem (2003): 919
Sequence-specific scission of DNA by the chemical nuclease activity of 1,10-phenanthroline-copper(I) targeted by RNA
Authors: Chen CB, Gorin MB, Sigman DS.
Journal: Proc Natl Acad Sci U S A (1993): 4206