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Succinimidyl 4,4-azipentanoate [NHS-Diazirine]

Succinimidyl 4,4-azipentanoate, also known as NHS-Diazirine, represents a significant breakthrough in crosslinking technology. This compound belongs to a novel class of heterobifunctional crosslinkers (e.g., SDA, LC-SDA, and SDAD) that have effectively combined two established chemical modalities, N-hydroxysuccinimide (NHS) ester chemistry and diazirine-based photoreactions. At pH 7 to 9, the NHS ester groups form covalent amide bonds with primary amines on one protein, while the diazirine (azipentanoate) moieties exhibit efficient reactivity towards amino acid side chains or peptide backbones on another protein within the prescribed spacer arm distance, once activated by long-wave UV light (330-370 nm). SDA's two-step chemical crosslinking process can be easily activated using conventional laboratory UV lamps, streamlining experimental protocols. Furthermore, SDA crosslinkers demonstrate excellent photostability even under standard laboratory lighting conditions, eliminating the need for a light-restricted environment. Given that NHS-ester diazirine derivatives lack a charged group and are membrane-permeable, they are ideally suited for in vivo intracellular and intramembrane conjugations and investigating protein-protein interactions.

References

View all 11 references: Citation Explorer
SpotLink enables sensitive and precise identification of site nonspecific cross-links at the proteome scale.
Authors: Zhang, Weijie and Gong, Pengyun and Shan, Yichu and Zhao, Lili and Hu, Hongke and Wei, Qiushi and Liang, Zhen and Liu, Chao and Zhang, Lihua and Zhang, Yukui
Journal: Briefings in bioinformatics (2022)
3D designed and printed chemical generators for on demand reagent synthesis.
Authors: Zalesskiy, Sergey S and Kitson, Philip J and Frei, Przemyslaw and Bubliauskas, Andrius and Cronin, Leroy
Journal: Nature communications (2019): 5496
Quantitative Photo-crosslinking Mass Spectrometry Revealing Protein Structure Response to Environmental Changes.
Authors: Müller, Fränze and Graziadei, Andrea and Rappsilber, Juri
Journal: Analytical chemistry (2019): 9041-9048
Photolytic Labeling To Quantify Peptide-Water Interactions in Lyophilized Solids.
Authors: Chen, Yuan and Topp, Elizabeth M
Journal: Molecular pharmaceutics (2019): 1053-1064
Quantitative Analysis of Peptide-Matrix Interactions in Lyophilized Solids Using Photolytic Labeling.
Authors: Chen, Yuan and Topp, Elizabeth M
Journal: Molecular pharmaceutics (2018): 2797-2806
Page updated on May 19, 2025

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Unit size
5 x 1 mg
25 mg
Catalog Number
3900039001
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Physical properties

Molecular weight

225.2

Solvent

DMSO

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Freeze (< -15 °C); Desiccated
UNSPSC12171501

CAS

1239017-80-1
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