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Quantitation of Lysosomal Trapping of Basic Lipophilic Compounds Using In Vitro Assays and In Silico Predictions Based on the Determination of the Full pH Profile of the Endo-/Lysosomal System in Rat Hepatocytes
Authors: Schmitt, M. V., Lienau, P., Fricker, G., Reichel, A.
Journal: Drug Metab Dispos (2019): 49-57

Detection and discrimination of Shigella sonnei and Shigella flexneri based on vacuolar responses in Saccharomyces cerevisiae
Authors: Nguyen, N. T., Park, R. M., Kim, Y. H., Min, J.
Journal: J Biotechnol (2018): 1-7

Transport and release of colloidal 3-mercaptopropionic acid-coated CdSe-CdS/ZnS core-multishell quantum dots in human umbilical vein endothelial cells
Authors: Fontana, J. M., Yin, H., Chen, Y., Florez, R., Brismar, H., Fu, Y.
Journal: Int J Nanomedicine (2017): 8615-8629

An autophagic process is activated in HepG2 cells to mediate BDE-100-induced toxicity
Authors: Pereira, L. C., Duarte, F. V., Varela, A. T., Rolo, A. P., Palmeira, C. M., Dorta, D. J.
Journal: Toxicology (2017): 59-65

Aggregatibacter actinomycetemcomitans leukotoxin induces cytosol acidification in LFA-1 expressing immune cells
Authors: Balashova, N., Dhingra, A., Boesze-Battaglia, K., Lally, E. T.
Journal: Mol Oral Microbiol (2016): 106-14

Bafilomycin A1 Attenuates Osteoclast Acidification and Formation, Accompanied by Increased Levels of SQSTM1/p62 Protein
Authors: Zhu, S., Rea, S. L., Cheng, T., Feng, H. T., Walsh, J. P., Ratajczak, T., Tickner, J., Pavlos, N., Xu, H. Z., Xu, J.
Journal: J Cell Biochem (2016): 1464-70

Rab11 and Lysotracker Markers Reveal Correlation between Endosomal Pathways and Transfection Efficiency of Surface-Functionalized Cationic Liposome-DNA Nanoparticles
Authors: Majzoub, R. N., Wonder, E., Ewert, K. K., Kotamraju, V. R., Teesalu, T., Safinya, C. R.
Journal: J Phys Chem B (2016): 6439-53

Presence of an isoform of H+-pyrophosphatase located in the alveolar sacs of a scuticociliate parasite of turbot: physiological consequences
Authors: Mallo, N., Lamas, J., Defelipe, A. P., Decastro, M. E., Sueiro, R. A., Leiro, J. M.
Journal: Parasitology (2016): 576-87

Fluorogenic Substrates for Visualizing Acidic Organelle Enzyme Activities
Authors: Harlan, F. K., Lusk, J. S., Mohr, B. M., Guzikowski, A. P., Batchelor, R. H., Jiang, Y., Naleway, J. J.
Journal: PLoS One (2016): e0156312

Intravital Imaging Reveals Angiotensin II-Induced Transcytosis of Albumin by Podocytes
Authors: Schiessl, I. M., Hammer, A., Kattler, V., Gess, B., Theilig, F., Witzgall, R., Castrop, H.
Journal: J Am Soc Nephrol (2016): 731-44

Gypenoside XVII Enhances Lysosome Biogenesis and Autophagy Flux and Accelerates Autophagic Clearance of Amyloid-beta through TFEB Activation
Authors: Meng, X., Luo, Y., Liang, T., Wang, M., Zhao, J., Sun, G., Sun, X.
Journal: J Alzheimers Dis (2016): 1135-50

ATP-containing vesicles in stria vascular marginal cell cytoplasms in neonatal rat cochlea are lysosomes
Authors: Liu, J., Liu, W., Yang, J.
Journal: Sci Rep (2016): 20903

The human CD5L/AIM-CD36 axis: A novel autophagy inducer in macrophages that modulates inflammatory responses
Authors: Sanjurjo, L., Amezaga, N., Aran, G., Naranjo-Gomez, M., Arias, L., Armengol, C., Borras, F. E., Sarrias, M. R.
Journal: Autophagy (2015): 487-502

The chemically synthesized ageladine A-derivative LysoGlow84 stains lysosomes in viable mammalian brain cells and specific structures in the marine flatworm Macrostomum lignano
Authors: Mordhorst, T., Awal, S., Jordan, S., Petters, C., Sartoris, L., Dringen, R., Bickmeyer, U.
Journal: Mar Drugs (2015): 920-35

Modulation of vacuolar pH is required for replication of Edwardsiella ictaluri in channel catfish macrophages
Authors: Baumgartner, W. A., Dubytska, L., Rogge, M. L., Mottram, P. J., Thune, R. L.
Journal: Infect Immun (2014): 2329-36

LysoTracker staining to aid in monitoring autophagy in Drosophila
Authors: DeVorkin, L., Gorski, S. M.
Journal: Cold Spring Harb Protoc (2014): 951-8

Evaluation of acridine orange, LysoTracker Red, and quinacrine as fluorescent probes for long-term tracking of acidic vesicles
Authors: Pierzynska-Mach, A., Janowski, P. A., Dobrucki, J. W.
Journal: Cytometry A (2014): 729-37

The influence of Pluronics nanovehicles on dark cytotoxicity, photocytotoxicity and localization of four model photosensitizers in cancer cells
Authors: Sobczynski, J., Kristensen, S., Berg, K.
Journal: Photochem Photobiol Sci (2014): 8-22

Use of LysoTracker dyes: a flow cytometric study of autophagy
Authors: Chikte, S., Panchal, N., Warnes, G.
Journal: Cytometry A (2014): 169-78

Assessment and optimization of autophagy monitoring methods in Arabidopsis roots indicate direct fusion of autophagosomes with vacuoles
Authors: Merkulova, E. A., Guiboileau, A., Naya, L., Masclaux-Daubresse, C., Yoshimoto, K.
Journal: Plant Cell Physiol (2014): 715-26

Exopolysaccharide production in response to medium acidification is correlated with an increase in competition for nodule occupancy
Authors: Geddes, B. A., Gonzalez, J. E., Oresnik, I. J.
Journal: Mol Plant Microbe Interact (2014): 1307-17

Lysosomal sequestration (trapping) of lipophilic amine (cationic amphiphilic) drugs in immortalized human hepatocytes (Fa2N-4 cells)
Authors: Kazmi, F., Hensley, T., Pope, C., Funk, R. S., Loewen, G. J., Buckley, D. B., Parkinson, A.
Journal: Drug Metab Dispos (2013): 897-905

Antibacterial capacity of differentiated murine embryonic stem cells during defined in vitro inflammatory conditions
Authors: Finkensieper, A., Bekhite, M. M., Fischer, H., Nitza, S., Figulla, H. R., Muller, J. P., Sauer, H., Wartenberg, M.
Journal: Stem Cells Dev (2013): 1977-90

LysoTracker is a marker of differentiated alveolar type II cells
Authors: Van der Velden, J. L., Bertoncello, I., McQualter, J. L.
Journal: Respir Res (2013): 123

Pseudomonas aeruginosa utilizes the type III secreted toxin ExoS to avoid acidified compartments within epithelial cells
Authors: Heimer, S. R., Evans, D. J., Stern, M. E., Barbieri, J. T., Yahr, T., Fleiszig, S. M.
Journal: PLoS One (2013): e73111

A photoinduced electron transfer-based nanoprobe as a marker of acidic organelles in mammalian cells
Authors: Marin, M. J., Galindo, F., Thomas, P., Wileman, T., Russell, D. A.
Journal: Anal Bioanal Chem (2013): 6197-207

Use of necrotic markers in the Drosophila ovary
Authors: Timmons, A. K., Meehan, T. L., Gartmond, T. D., McCall, K.
Journal: Methods Mol Biol (2013): 215-28

Use of LysoTracker to detect programmed cell death in embryos and differentiating embryonic stem cells
Authors: Fogel, J. L., Thein, T. Z., Mariani, F. V.
Journal: J Vis Exp (2012): se name="22647.enl" path="C:\Users\aatbi\Drop

In vivo and in vitro Leishmania amazonensis infection induces autophagy in macrophages
Authors: Cyrino, L. T., Araujo, A. P., Joazeiro, P. P., Vicente, C. P., Giorgio, S.
Journal: Tissue Cell (2012): 401-8

Actin cytoskeleton controls movement of intracellular organelles in pancreatic duct epithelial cells
Authors: Jung, S. R., Seo, J. B., Shim, D., Hille, B., Koh, D. S.
Journal: Cell Calcium (2012): 459-69

Labeling lysosomes in live cells with LysoTracker
Authors: Chazotte, B.
Journal: Cold Spring Harb Protoc (2011): pdb prot5571

Monitoring lysosomal activity in nanoparticle-treated cells
Authors: Neun, B. W., Stern, S. T.
Journal: Methods Mol Biol (2011): 207-12

Amyotrophic lateral sclerosis immunoglobulins G enhance the mobility of Lysotracker-labelled vesicles in cultured rat astrocytes
Authors: Stenovec, M., Milosevic, M., Petrusic, V., Potokar, M., Stevic, Z., Prebil, M., Kreft, M., Trkov, S., Andjus, P. R., Zorec, R.
Journal: Acta Physiol (Oxf) (2011): 457-71

Cellular vacuolation induced by Clostridium perfringens epsilon-toxin
Authors: Nagahama, M., Itohayashi, Y., Hara, H., Higashihara, M., Fukatani, Y., Takagishi, T., Oda, M., Kobayashi, K., Nakagawa, I., Sakurai, J.
Journal: FEBS J (2011): 3395-407

Involvement of the mitochondrial compartment in human NCL fibroblasts
Authors: Pezzini, F., Gismondi, F., Tessa, A., Tonin, P., Carrozzo, R., Mole, S. E., Santorelli, F. M., Simonati, A.
Journal: Biochem Biophys Res Commun (2011): 159-64

GABARAPL1 (GEC1) associates with autophagic vesicles
Authors: Chakrama, F. Z., Seguin-Py, S., Le Gr and , J. N., Fraichard, A., Delage-Mourroux, R., Despouy, G., Perez, V., Jouvenot, M., Boyer-Guittaut, M.
Journal: Autophagy (2010): 495-505

TBC-2 is required for embryonic yolk protein storage and larval survival during L1 diapause in Caenorhabditis elegans
Authors: Chotard, L., Skorobogata, O., Sylvain, M. A., Shrivastava, S., Rocheleau, C. E.
Journal: PLoS One (2010): e15662

A confocal study on the visualization of chromaffin cell secretory vesicles with fluorescent targeted probes and acidic dyes
Authors: Moreno, A., SantoDomingo, J., Fonteriz, R. I., Lobaton, C. D., Montero, M., Alvarez, J.
Journal: J Struct Biol (2010): 261-9

The dependence of enhanced lysosomal activity on the cellular aging of bovine aortic endothelial cells
Authors: Yoon, J., Kim, K. J., Choi, Y. W., Shin, H. S., Kim, Y. H., Min, J.
Journal: Mol Cell Biochem (2010): 175-8

Community heterogeneity and single-cell digestive activity of estuarine heterotrophic nanoflagellates assessed using lysotracker and flow cytometry
Authors: Sintes, E., del Giorgio, P. A.
Journal: Environ Microbiol (2010): 1913-25

Lipophilic cationic drugs increase the permeability of lysosomal membranes in a cell culture system
Authors: Kornhuber, J., Henkel, A. W., Groemer, T. W., Stadtler, S., Welzel, O., Tripal, P., Rotter, A., Bleich, S., Trapp, S.
Journal: J Cell Physiol (2010): 152-64

Macroautophagy is defective in mucolipin-1-deficient mouse neurons
Authors: Curcio-Morelli, C., Charles, F. A., Micsenyi, M. C., Cao, Y., Venugopal, B., Browning, M. F., Dobrenis, K., Cotman, S. L., Walkley, S. U., Slaugenhaupt, S. A.
Journal: Neurobiol Dis (2010): 370-7

Transgenic mice enriched in omega-3 fatty acids are more susceptible to pulmonary tuberculosis: impaired resistance to tuberculosis in fat-1 mice
Authors: Bonilla, D. L., Fan, Y. Y., Chapkin, R. S., McMurray, D. N.
Journal: J Infect Dis (2010): 399-408

Autophagy is induced by adenoviral-mediated interferon alpha treatment in interferon resistant bladder cancer and normal urothelial cells as a cell death protective mechanism but not by the bystander factors produced
Authors: Zhang, X. Q., Dunner, K., Jr., Benedict, W. F.
Journal: Cancer Gene Ther (2010): 579-84

Involvement of lysosomes in the early stages of axon degeneration
Authors: Zheng, J., Yan, T., Feng, Y., Zhai, Q.
Journal: Neurochem Int (2010): 516-21

Roles of mitophagy and the mitochondrial permeability transition in remodeling of cultured rat hepatocytes
Authors: Rodriguez-Enriquez, S., Kai, Y., Maldonado, E., Currin, R. T., Lemasters, J. J.
Journal: Autophagy (2009): 1099-106

A novel role for the Drosophila epsin (lqf): involvement in autophagy
Authors: Csikos, G., Lippai, M., Lukacsovich, T., Juhasz, G., Henn, L., Erdelyi, M., Maroy, P., Sass, M.
Journal: Autophagy (2009): 636-48

Francisella tularensis phagosomal escape does not require acidification of the phagosome
Authors: Clemens, D. L., Lee, B. Y., Horwitz, M. A.
Journal: Infect Immun (2009): 1757-73

Protein kinase C modulates synaptic vesicle acidification in a ribbon type nerve terminal in the retina
Authors: Abreu, B. J., Guimaraes, M., Uliana, L. C., Vigh, J., von Gersdorff, H., Prado, M. A., Guatimosim, C.
Journal: Neurochem Int (2008): 155-64

Photoconversion of Lysotracker Red to a green fluorescent molecule
Authors: Freundt, E. C., Czapiga, M., Lenardo, M. J.
Journal: Cell Res (2007): 956-8

Molecular characterization of an inhibitor of apoptosis in the Egyptian armyworm, Spodoptera littoralis, and midgut cell death during metamorphosis
Authors: Vilaplana, L., Pascual, N., Perera, N., Belles, X.
Journal: Insect Biochem Mol Biol (2007): 1241-8

Vesicle movements are governed by the size and dynamics of F-actin cytoskeletal structures in bovine chromaffin cells
Authors: Giner, D., Lopez, I., Villanueva, J., Torres, V., Viniegra, S., Gutierrez, L. M.
Journal: Neuroscience (2007): 659-69

Tracker dyes to probe mitochondrial autophagy (mitophagy) in rat hepatocytes
Authors: Rodriguez-Enriquez, S., Kim, I., Currin, R. T., Lemasters, J. J.
Journal: Autophagy (2006): 39-46

The ESAT-6/CFP-10 secretion system of Mycobacterium marinum modulates phagosome maturation
Authors: Tan, T., Lee, W. L., Alex and er, D. C., Grinstein, S., Liu, J.
Journal: Cell Microbiol (2006): 1417-29

Kinetics of the progesterone-induced acrosome reaction and its relation to intracellular calcium responses in individual human spermatozoa
Authors: Harper, C. V., Barratt, C. L., Publicover, S. J., Kirkman-Brown, J. C.
Journal: Biol Reprod (2006): 933-9

Whole insect and mammalian embryo imaging with confocal microscopy: morphology and apoptosis
Authors: Zucker, R. M.
Journal: Cytometry A (2006): 1143-52

Rhodococcus equi can survive a phagolysosomal environment in macrophages by suppressing acidification of the phagolysosome
Authors: Toyooka, K., Takai, S., Kirikae, T.
Journal: J Med Microbiol (2005): 1007-15

Quantitation of the lysosomotropic character of cationic amphiphilic drugs using the fluorescent basic amine Red DND-99
Authors: Lemieux, B., Percival, M. D., Falgueyret, J. P.
Journal: Anal Biochem (2004): 247-51

Phagocytosis and intracellular fate of Aspergillus fumigatus conidia in alveolar macrophages
Authors: Ibrahim-Granet, O., Philippe, B., Boleti, H., Boisvieux-Ulrich, E., Grenet, D., Stern, M., Latge, J. P.
Journal: Infect Immun (2003): 891-903

A2E, a lipofuscin fluorophore, in human retinal pigmented epithelial cells in culture
Authors: Sparrow, J. R., Parish, C. A., Hashimoto, M., Nakanishi, K.
Journal: Invest Ophthalmol Vis Sci (1999): 2988-95

Effects of cytokines on mycobacterial phagosome maturation
Authors: Via, L. E., Fratti, R. A., McFalone, M., Pagan-Ramos, E., Deretic, D., Deretic, V.
Journal: J Cell Sci (1998): 897-905