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PhosphoWorks™ Fluorimetric Pyrophosphate Assay Kit *Enhanced Selectivity*

Pyrophosphate, ATP and phosphate dose responses were measured with PhosphoWorks™ Fluoremetric Pyrophosphate Assay Kit in a solid black 96-well plate using a fluorescence microplate reader.
Pyrophosphate, ATP and phosphate dose responses were measured with PhosphoWorks™ Fluoremetric Pyrophosphate Assay Kit in a solid black 96-well plate using a fluorescence microplate reader.
Pyrophosphate, ATP and phosphate dose responses were measured with PhosphoWorks™ Fluoremetric Pyrophosphate Assay Kit in a solid black 96-well plate using a fluorescence microplate reader.
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H-phraseH303, H313, H333
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OverviewpdfSDSpdfProtocol


See also: Polymerases
Pyrophosphate (PPi) is produced by a number of biochemical reactions, such as ATP hydrolysis, DNA and RNA polymerizations, cyclic AMP formation by the enzyme adenylate cyclase and the enzymatic activation of fatty acids to form their coenzyme A esters. Our PhosphoWroks™ Pyrophosphate Assay Kit provides the most robust spectrophotometric method for measuring pyrophosphate. This kit uses our proprietary fluorogenic pyrophosphate sensor that has its fluorescence intensity proportionally dependent upon the concentration of pyrophosphate. The PPi sensor used in the kit has quite high selectivity to PPi compared to phosphate and ATP. Our assay is much easier and more robust than the enzyme-coupling pyrophosphate methods that require at least two enzymes for their pyrophosphate detections. The kit provides all the essential components for assaying pyrophosphate. This kit has been successfully used in high throughput screening (HTS). Please inquire special HTS bulk package discount for the screening of >10,000 assays.

Platform


Fluorescence microplate reader

Excitation370 nm
Emission470 nm
Cutoff455 nm
Recommended plateSolid black

Components


Example protocol


AT A GLANCE

Protocol summary

  1. Prepare PPi Sensor working solution  (50 µL)
  2. Add Pyrophosphate standards and/or test samples (50 µL)
  3. Incubate at room temperature for 10 to 30 minutes
  4. Monitor fluorescence intensity at Ex/Em = 370/470 nm (Cutoff = 455 nm)

Important notes
Thaw all the kit components at room temperature before starting the experiment.

PREPARATION OF STOCK SOLUTION

Unless otherwise noted, all unused stock solutions should be divided into single-use aliquots and stored at -20 °C after preparation. Avoid repeated freeze-thaw cycles.

1. PPi Sensor stock solution (200X):
Add 50 µL of DMSO (Component D) into the vial of PPi Sensor (Component B) to make 200X PPi Sensor stock solution. Note: 25 µL of the PPi Sensor stock solution is enough for one 96-well plate.

 

PREPARATION OF STANDARD SOLUTION

Pyrophosphate standard

For convenience, use the Serial Dilution Planner: https://www.aatbio.com/tools/serial-dilution/21614

Prepare 1 mM Pyrophosphate standard by adding 10 µL of 50 mM Pyrophosphate Standard (Component C) into 490 µL of Assay Buffer (Component A), or buffer of your choice (preferably 50 mM Hepes buffer, pH 7) to make 1 mM Pyrophosphate standard. Take 1 mM Pyrophosphate standard (PS7) to perform 1:3 serial dilutions to get serially diluted Pyrophosphate standards (PS6-PS1) with Assay Buffer (Component A).

PREPARATION OF WORKING SOLUTION

 Add 25 µL of 200X PPi Sensor stock solution to 5 mL of Assay Buffer (Component A), and mix them well. Note: Due to the high sensitivity of this assay to PPi, it is important to use PPi-free labware and reagents. Note: DTT (1 uM) will increase the background, MgCl2 ≥ 2mM decrease the response.

SAMPLE EXPERIMENTAL PROTOCOL

Table 1. Layout of pyrophosphate standards and test samples in a solid black 96-well microplate.  PS = Pyrophosphate Standard, BL = Blank Control, TS = Test Sample. 

BLBLTS TS
PS1PS1......
PS2PS2......
PS3PS3  
PS4PS4  
PS5PS5  
PS6PS6  
PS7 PS7  

Table 2. Reagent composition for each well

WellVolumeReagent
PS1-PS750 µLSerial Dilution (1 to 1000 µM)
BL50 µLAssay Buffer (Component A)
TS50 µLSample
  1. Prepare Pyrophosphate standards (PS), blank controls (BL), and test samples (TS) according to the layout provided in Tables 1 and 2. For a 384-well plate, use 25 µL of reagent per well instead of 50 µL.

  2. Add 50 µL of PPi Sensor working solution to each well of Pyrophosphate standard, blank control, and test samples to make the total assay volume of 100 µL/well. For a 384-well plate, add 25 µL of  PPi Sensor working solution into each well instead, for a total volume of 50 µL/well.

  3. Incubate the reaction at room temperature for 10 - 30 minutes, protected from light.

  4. Monitor the fluorescence increase with a fluorescence plate reader at Ex/Em = 370/470 nm (Cutoff = 455 nm)

Images


Citations


View all 11 citations: Citation Explorer
Inorganic Pyrophosphate at Serum Concentration May Not Be Able to Inhibit Mineralization: A Study in Aqueous Solutions and Serum
Authors: Cheng, Yuxuan and Ru, Jing and Feng, Chaobo and Liu, Xiaohao and Zeng, Hua and Tan, Shuo and Chen, Xi and Chen, Feng and Lu, Bing-Qiang
Journal: ACS Omega (2024)
Metabolic enzyme UAP1 mediates IRF3 pyrophosphorylation to facilitate innate immune response
Authors: Yang, Shuai and Jin, Shouheng and Xian, Huifang and Zhao, Zhiyao and Wang, Liqiu and Wu, Yaoxing and Zhou, Liang and Li, Mengqiu and Cui, Jun
Journal: Molecular Cell (2023)
AaTAS1 and AaMFS1 Genes for Biosynthesis or Efflux Transport of Tenuazonic Acid and Pathogenicity of Alternaria alternata
Authors: Sun, Fan and Cao, Xueqiang and Yu, Dianzhen and Hu, Dongqiang and Yan, Zheng and Fan, Yingying and Wang, Cheng and Wu, Aibo
Journal: Molecular Plant-Microbe Interactions (2022): 416--427
Biological studies and target engagement of the 2-C-methyl-d-erythritol 4-phosphate cytidylyltransferase (IspD)-targeting antimalarial agent (1 R, 3 S)-MMV008138 and analogs
Authors: Ghavami, Maryam and Merino, Emilio F and Yao, Zhong-Ke and Elahi, Rubayet and Simpson, Morgan E and Fern{\'a}ndez-Murga, Maria L and Butler, Joshua H and Casasanta, Michael A and Krai, Priscilla M and Totrov, Maxim M and others,
Journal: ACS infectious diseases (2017): 549--559
Structural Insights into Inhibition of Escherichia coli Penicillin-binding Protein 1B
Authors: King, Dustin T and Wasney, Gregory A and Nosella, Michael and Fong, Anita and Strynadka, Natalie CJ
Journal: Journal of Biological Chemistry (2017): 979--993
Biological studies and target-engagement of the 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (IspD)-targeting antimalarial agent (1R, 3S)-MMV008138 and analogs
Authors: Ghavami, Maryam and Merino, Emilio Fern and o , undefined and Yao, ZhongKe and Elahi, Rubayet and Simpson, Morgan and Fern, undefined and ez-Murga, Maria and Butler, Joshua Hayden and Casasanta, Michael and Krai, Priscilla and Totrov, Maxim and others, undefined
Journal: ACS Infectious Diseases (2017)
Host-pathogen interaction and signaling molecule secretion are modified in the dpp3 knockout mutant of Candida lusitaniae
Authors: Sabra, Ayman and Bessoule, Jean-Jacques and Atanasova-Penichon, Vessela and No{\"e}l, Thierry and Dementhon, Karine
Journal: Infection and immunity (2014): 413--422
Biomarkers identified by urinary metabonomics for noninvasive diagnosis of nutritional rickets
Authors: Wang, Maoqing and Yang, Xue and Ren, Lihong and Li, Songtao and He, Xuan and Wu, Xiaoyan and Liu, Tingting and Lin, Liqun and Li, Ying and Sun, Changhao
Journal: Journal of proteome research (2014): 4131--4142
Host-Pathogen Interaction and Signaling Molecule Secretion Are Modified in the dpp3 Knockout Mutant of Candida lusitaniae
Authors: Sabra, Ayman and Bessoule, Jean-Jacques and Atanasova-Penichon, Vessela and Noel, Thierry and Dementhon, Karine
Journal: Infection and immunity (2014): 413--422