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Cy5DIGE NHS ester

Cy5DIGE NHS ester, an equivalent of Cy5® NHS ester minimal dye, is one of the major colors used for labeling proteins subject to DIGE analysis. Cy5DIGE is commonly used together with C2DIGE and/or Cy3DIGE. Cy2DIGE, C3DIGE and Cy5DIGE are specially designed for precise comparison of protein expression in two or three samples of lysates. Perfect mobility matching and bright dye fluorescence allow the efficient detection and high resolution of minor proteins on 2D gel electrophoresis. Cy2DIGE, C3DIGE and Cy5DIGE are compatible to all imagers capable of detection of Cy2, Cy3, and Cy5 dyes. The gels labeled with Cy2DIGE, C3DIGE and Cy5DIGE are size- and charge-matched fluorescent dyes for detecting protein abundance differences in 2-D Fluorescence Difference Gel Electrophoresis (DIGE). Cy2DIGE, C3DIGE and Cy5DIGE detect up to three prelabeled protein samples and standards on the same 2-D electrophoresis gel. The size- and charge-matched dyes enable co-migration of labeled samples within the gel. They are bright on proteins, allowing the minimal loss of signal during labeling, separation, and scanning. These dyes have minimal spectral overlap, minimizing the crosstalk that commonly contributes to high background. Their pH-insensitive fluorescence allows DIGEs run at a broad pH range. Cy2®, Cy3® and Cy5® are the trademarks of GE Healthcare.

Calculators

Common stock solution preparation

Table 1. Volume of DMSO needed to reconstitute specific mass of Cy5DIGE NHS ester to given concentration. Note that volume is only for preparing stock solution. Refer to sample experimental protocol for appropriate experimental/physiological buffers.

0.1 mg0.5 mg1 mg5 mg10 mg
1 mM162.288 µL811.438 µL1.623 mL8.114 mL16.229 mL
5 mM32.458 µL162.288 µL324.575 µL1.623 mL3.246 mL
10 mM16.229 µL81.144 µL162.288 µL811.438 µL1.623 mL

Molarity calculator

Enter any two values (mass, volume, concentration) to calculate the third.

Mass (Calculate)Molecular weightVolume (Calculate)Concentration (Calculate)Moles
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Spectrum

Product family

NameExcitation (nm)Emission (nm)Extinction coefficient (cm -1 M -1)Correction Factor (260 nm)Correction Factor (280 nm)
Cy2DIGE NHS ester4925081500000.080.15
Cy3B NHS ester56057112000010.0480.069
Cy3DIGE NHS ester55556915000010.070.073
CypHer5E NHS Ester643660---
CypHer7E NHS Ester748769---
QXY21 NHS ester [equivalent to QSY-21 NHS ester]--890001-0.32
QXY7 NHS ester [equivalent to QSY-7 NHS ester]--900001-0.22
XFD350 NHS Ester343441190000.250.19
XFD430 NHS ester43254015,000-0.28
XFD488 NHS Ester499520710000.300.11
XFD514 NHS Ester518543800000.310.18
XFD532 NHS Ester534553810000.240.09
XFD546 NHS Ester5615721120000.210.12
XFD555 NHS Ester5535681500000.080.08
XFD568 NHS Ester579603913000.450.46
XFD594 NHS Ester590618900000.430.56
XFD647 NHS Ester6506712390000.000.03
XFD660 NHS Ester6636911320000.000.10
XFD680 NHS Ester6817041840000.000.05
XFD700 NHS Ester6967191920000.000.07
XFD750 NHS Ester7527762400000.000.04
XFD790 NHS Ester782805260,0000.090.08
Show More (13)

Citations

View all 34 citations: Citation Explorer
LncRNA AL592284. 1 facilitates proliferation and metastasis of cervical cancer cells via miR-30a-5p/Vimentin/EMT axis
Authors: Zhang, Jing and Liu, Hong-li and Liu, Jing-bo and Zhang, Yuan and Liu, Jing and Li, Yan-hua
Journal: Biochemical and Biophysical Research Communications (2021): 95--102
Early quantitative profiling of differential retinal protein expression in lens-induced myopia in guinea pig using fluorescence difference two-dimensional gel electrophoresis
Authors: Wu, Y., Lam, C. S., Tse, D. Y., To, C. H., Liu, Q., McFadden, S. A., Chun, R. K., Li, K. K., Bian, J., Lam, C.
Journal: Mol Med Rep (2018): 5571-5580
Proteomic Analysis of Bovine Pregnancy-specific Serum Proteins by 2D Fluorescence Difference Gel Electrophoresis
Authors: Lee, J. E., Lee, J. Y., Kim, H. R., Shin, H. Y., Lin, T., Jin, D. I.
Journal: Asian-Australas J Anim Sci (2015): 788-95
Comparative proteomic analysis of different Toxoplasma gondii genotypes by two-dimensional fluorescence difference gel electrophoresis combined with mass spectrometry
Authors: Zhou, D. H., Zhao, F. R., Nisbet, A. J., Xu, M. J., Song, H. Q., Lin, R. Q., Huang, S. Y., Zhu, X. Q.
Journal: Electrophoresis (2014): 533-45
Comparative proteomic analysis of Dan'er malts produced from distinct malting processes by two-dimensional fluorescence difference in gel electrophoresis (2D-DIGE)
Authors: Li, X., Jin, Z., Gao, F., Lu, J., Cai, G., Dong, J., Yu, J., Yang, M.
Journal: J Agric Food Chem (2014): 9310-6
Page updated on August 12, 2025

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Catalog Number25306
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Physical properties

Molecular weight

616.19

Solvent

DMSO

Spectral properties

Correction Factor (260 nm)

0.02

Correction Factor (280 nm)

0.03

Correction Factor (482 nm)

0.009

Correction Factor (565 nm)

0.09

Extinction coefficient (cm -1 M -1)

2500001

Excitation (nm)

651

Emission (nm)

670

Quantum yield

0.271, 0.42

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Freeze (< -15 °C); Minimize light exposure
UNSPSC12171501
Cy5DIGE NHS ester, an equivalent of Cy5&reg; NHS ester minimal dye, is one of the major colors used for labeling proteins subject to DIGE analysis. Cy5DIGE is commonly used together with C2DIGE and/or Cy3DIGE. Cy2DIGE, C3DIGE and Cy5DIGE are specially designed for precise comparison of protein expression in two or three samples of lysates.
Cy5DIGE NHS ester, an equivalent of Cy5&reg; NHS ester minimal dye, is one of the major colors used for labeling proteins subject to DIGE analysis. Cy5DIGE is commonly used together with C2DIGE and/or Cy3DIGE. Cy2DIGE, C3DIGE and Cy5DIGE are specially designed for precise comparison of protein expression in two or three samples of lysates.
Cy5DIGE NHS ester, an equivalent of Cy5&reg; NHS ester minimal dye, is one of the major colors used for labeling proteins subject to DIGE analysis. Cy5DIGE is commonly used together with C2DIGE and/or Cy3DIGE. Cy2DIGE, C3DIGE and Cy5DIGE are specially designed for precise comparison of protein expression in two or three samples of lysates.