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AAT Bioquest

CytoALL™ DNA Red 600

The common fluorescent DNA probes (such as DAPI, Hoechst or SYBR® Green) predominantly stains the DNAs in nuclei. There is a unmet need for a universal DNA probe that can stain the total cellular DNAs in live cells. CytoALL™ DNA Red 600 has been developed to stain all the DNAs in live cells. CytoALL™ DNA Red 600 is a DNA-selective, cell permeable dye that stains all DNA contents including nuclei and mitochondria in live cells. The staining is simple and robust. It only requires a single step of incubating cells in the presence of CytoALL™ DNA Red 600. The cells can be viewed with a TRITC filter set, allowing it to multiplex with various other fluorescent imaging probes. AAT Bioquest also offers a variety of DNA probes for staining nuclei (such as Nuclear Blue™, Nuclear Green™ and Nuclear Red™) and MitoDNA™ for selective staining of mitochondrial DNAs (mtDNA).

Example protocol

AT A GLANCE

Important Note

Paragraph content

Protocol Summary
  1. Prepare the cells in growth medium.

  2. Stain the cells with CytoALL™ DNA Red 600 working solution.

  3. Incubate at 37 °C for 5-15 minutes.

  4. Use a fluorescence microscope with a Cy3 filter set to monitor the fluorescence intensity.

PREPARATION OF STOCK SOLUTIONS

Unless otherwise noted, all unused stock solutions should be divided into single-use aliquots and stored at -20 °C after preparation. Avoid repeated freeze-thaw cycles

CytoALL™ DNA Red 600 Stock Solution
  1. Prepare a 5 to 10 mM CytoALL™ DNA Red 600 stock solution in DMSO. For example, to make a 10 mM stock solution add 245 μL of DMSO to the vial of CytoALL™ DNA Red 600, and mix well.

    Note: Prepare single-use aliquots of the CytoALL™ DNA Red 600 stock solution and store at ≤ -20°C, protected from light. Avoid repeated freeze-thaw cycles.

PREPARATION OF WORKING SOLUTION

CytoALL™ DNA Red 600 Working Solution
  1. Prepare a 10 to 20 μM working solution by diluting the CytoALL™ DNA Red 600 stock solution with Hanks solution containing 20 mM Hepes buffer (HHBS).

    Note: For optimal results, use this solution within a few hours of preparation.

    Note: Protect the CytoALL™ DNA Red 600 working solution from light by covering it with foil or storing it in a dark place.

SAMPLE EXPERIMENTAL PROTOCOL

  1. Plate cells as desired in a 96-well black wall-clear bottom plate.

  2. Remove the cell culture medium and add 100 µL of CytoALL™ DNA Red 600 working solution to the cells.

  3. Incubate the cells at 37 º C for 5 to 15 minutes, protected from light.

    Note: The optimal concentration and incubation time for CytoALL™ DNA Red 600 vary depending on the cell line. It is necessary to test different concentrations to determine the most effective dose for your specific cell line.

  4. Remove the dye working solution and wash the cells twice with HHBS buffer.

  5. Add HHBS buffer and analyze the cells with the fluorescence microscope using a Cy3 filter set.

Spectrum

References

View all 50 references: Citation Explorer
Tag-free fluorometric aptasensor for detection of chromium(VI) in foods via SYBR Green I signal amplification and aptamer structure transition.
Authors: Zhu, Jiangxiong and Yin, Hao and Zheng, Sisi and Yu, Hong and Yang, Linnan and Wang, Lumei and Geng, Xueqing and Deng, Yun
Journal: Journal of the science of food and agriculture (2024)
Detection of SARS-CoV-2 B.1.1.529 (Omicron) variant by SYBR Green-based RT-qPCR.
Authors: Abdel-Sater, Fadi and Makki, Rawan and Khalil, Alia and Hussein, Nader and Borghol, Nada and Abi Khattar, Ziad and Hamade, Aline and Khreich, Nathalie and El Homsi, Mahoumd and Kanaan, Hussein and Raad, Line and Skafi, Najwa and Al-Nemer, Fatima and Ghandour, Zeinab and El-Zein, Nabil and Abou-Hamdan, Mhamad and Akl, Haidar and Hamade, Eva and Badran, Bassam and Hamze, Kassem
Journal: Biology methods & protocols (2024): bpae020
Development of a fast and sensitive RT-qPCR assay based on SYBR® green for diagnostic and quantification of Avian Nephritis Virus (ANV) in chickens affected with enteric disease.
Authors: Loor-Giler, Anthony and Castillo-Reyes, Sara and Santander-Parra, Silvana and Caza, Manuel and Kyriakidis, Nikolaos C and Ferreira, Antonio J Piantino and Nuñez, Luis
Journal: BMC veterinary research (2024): 33
A label free fluorescent aptamer sensor based on the combined action of Graphene oxide and SYBR Green I for the detection of Aflatoxin B1.
Authors: Hu, Mengyang and Cheng, Meng and Wang, Na and Sang, Yidan and Dong, Yafei and Wang, Luhui
Journal: IEEE transactions on nanobioscience (2024)
The Significance and Importance of dPCR, qPCR, and SYBR Green PCR Kit in the Detection of Numerous Diseases.
Authors: Shahrajabian, Mohamad Hesam and Sun, Wenli
Journal: Current pharmaceutical design (2024): 169-179
Page updated on June 9, 2025

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Catalog Number22270
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Physical properties

Molecular weight

409.42

Solvent

DMSO

Spectral properties

Excitation (nm)

582

Emission (nm)

598

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Freeze (< -15 °C); Minimize light exposure

Platform

Fluorescence microscope

ExcitationCy3 Filter Set
EmissionCy3 Filter Set
Recommended plateBlack wall, clear bottom
The fluorescence response of CytoALL™ DNA Red 600 (20 µM) was evaluated in HeLa cells before and after treatment with DNase (2 units/reaction) at 37°C for 1 hour. Fluorescence intensities were monitored using a fluorescence microscope equipped with a Cy3 filter.
The fluorescence response of CytoALL™ DNA Red 600 (20 µM) was evaluated in HeLa cells before and after treatment with DNase (2 units/reaction) at 37°C for 1 hour. Fluorescence intensities were monitored using a fluorescence microscope equipped with a Cy3 filter.
The fluorescence response of CytoALL™ DNA Red 600 (20 µM) was evaluated in HeLa cells before and after treatment with DNase (2 units/reaction) at 37°C for 1 hour. Fluorescence intensities were monitored using a fluorescence microscope equipped with a Cy3 filter.