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FastClick™ Cy5 Alkyne

The reaction (Green Bar) of FastClick Cy5 Alkyne with coumarin azide occurs under extremely mild conditions (e.g., [Azide] = 0.02 mM, [Alkyne] = 0.02 mM, [CuSO4] = 0.02 mM, [Sodium Ascorbate] = 5 mM, in 100 mM HEPES) under which the common Cy5 alkyne (Red Bar) does not effectively react with the coumarin azide substrate.
The reaction (Green Bar) of FastClick Cy5 Alkyne with coumarin azide occurs under extremely mild conditions (e.g., [Azide] = 0.02 mM, [Alkyne] = 0.02 mM, [CuSO4] = 0.02 mM, [Sodium Ascorbate] = 5 mM, in 100 mM HEPES) under which the common Cy5 alkyne (Red Bar) does not effectively react with the coumarin azide substrate.
The reaction (Green Bar) of FastClick Cy5 Alkyne with coumarin azide occurs under extremely mild conditions (e.g., [Azide] = 0.02 mM, [Alkyne] = 0.02 mM, [CuSO4] = 0.02 mM, [Sodium Ascorbate] = 5 mM, in 100 mM HEPES) under which the common Cy5 alkyne (Red Bar) does not effectively react with the coumarin azide substrate.
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Physical properties
Molecular weight965.24
SolventDMSO
Spectral properties
Correction Factor (260 nm)0.02
Correction Factor (280 nm)0.03
Correction Factor (482 nm)0.009
Correction Factor (565 nm)0.09
Extinction coefficient (cm -1 M -1)2500001
Excitation (nm)651
Emission (nm)670
Quantum yield0.271, 0.42
Storage, safety and handling
H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22
StorageFreeze (< -15 °C); Minimize light exposure
Alternative formats
FastClick™ Cy5 Azide

OverviewpdfSDSpdfProtocol


See also: Click Chemistry
Molecular weight
965.24
Correction Factor (260 nm)
0.02
Correction Factor (280 nm)
0.03
Correction Factor (482 nm)
0.009
Correction Factor (565 nm)
0.09
Extinction coefficient (cm -1 M -1)
2500001
Excitation (nm)
651
Emission (nm)
670
Quantum yield
0.271, 0.42
FastClick™ Cy5 Alkyne contains both the moiety of FastClick (for assisting click efficiency) and Cy5 fluorophore (as the fluorescence tag) for developing Cy5-based fluorescent probes. It readily reacts with an azido-modified biomolecule under extremely mild conditions. Cy5 is a common deep red fluorophore in combination with Cy3 (orange-red fluorescence) for dual color detections. Cy5 conjugates are widely used in fluorescence imaging and flow cytometric applications. FastClick™ reagents have been developed by the scientists of AAT Bioquest for enhancing the yield and reaction speed of copper-catalyzed azide-alkyne cycloaddition (CuAAC) reaction. They contain a copper-chelating ligand that significantly stabilizes the Cu(I) oxidation state and thus accelerates the click reaction. They do not require the use of an external copper-chelator (such as the common THPTA or BTTAA). The high concentration of copper chelators is known to have a detrimental effect on DNA/RNA, thus causing biocompatibility issues. The introduction of a copper-chelating moiety at the reporter molecule allows for a dramatic raise of the effective Cu(I) concentration at the reaction site and thus accelerates the reaction. Under extremely mild conditions the FastClick™ azides and alkynes react much faster in high yield compared to the corresponding conventional CuAAC reactions. Click chemistry was developed by K. Barry Sharpless as a robust and specific method of ligating two molecules together. Two important characteristics make click chemistry attractive for assembling biomolecules. First, click reactions are bio-orthogonal, thus the click chemistry-functionalized biomolecules would not react with the natural biomolecules that lack a clickable functional group. Second, the reactions proceed with ease under mild conditions, such as at room temperature and in aqueous media.

Calculators


Common stock solution preparation

Table 1. Volume of DMSO needed to reconstitute specific mass of FastClick™ Cy5 Alkyne to given concentration. Note that volume is only for preparing stock solution. Refer to sample experimental protocol for appropriate experimental/physiological buffers.

0.1 mg0.5 mg1 mg5 mg10 mg
1 mM103.601 µL518.006 µL1.036 mL5.18 mL10.36 mL
5 mM20.72 µL103.601 µL207.202 µL1.036 mL2.072 mL
10 mM10.36 µL51.801 µL103.601 µL518.006 µL1.036 mL

Molarity calculator

Enter any two values (mass, volume, concentration) to calculate the third.

Mass (Calculate)Molecular weightVolume (Calculate)Concentration (Calculate)Moles
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Spectrum


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spectrum

Spectral properties

Correction Factor (260 nm)0.02
Correction Factor (280 nm)0.03
Correction Factor (482 nm)0.009
Correction Factor (565 nm)0.09
Extinction coefficient (cm -1 M -1)2500001
Excitation (nm)651
Emission (nm)670
Quantum yield0.271, 0.42

Product Family


NameExcitation (nm)Emission (nm)Extinction coefficient (cm -1 M -1)Quantum yieldCorrection Factor (260 nm)Correction Factor (280 nm)
FastClick™ Cy3 Alkyne55556915000010.1510.070.073
FastClick™ Cy7 Alkyne7567792500000.30.050.036
FastClick™ XFD350 Alkyne34344119000-0.250.19
FastClick™ XFD488 Alkyne499520710000.9210.300.11
FastClick™ XFD555 Alkyne5535681500000.110.080.08
FastClick™ XFD647 Alkyne6506712390000.3310.000.03
FastClick™ XFD750 Alkyne7527762400000.1210.000.04

Images


References


View all 50 references: Citation Explorer
Engineering Neurotoxin-Functionalized Exosomes for Targeted Delivery to the Peripheral Nervous System.
Authors: Krishnan, Mena Asha and Alimi, Olawale A and Pan, Tianshu and Kuss, Mitchell and Korade, Zeljka and Hu, Guoku and Liu, Bo and Duan, Bin
Journal: Pharmaceutics (2024)
Fluorescent Properties of Cyanine Dyes As a Matter of the Environment.
Authors: Fan, Fan and Povedailo, Vladimir A and Lysenko, Ivan L and Seviarynchyk, Tatsiana P and Sharko, Olga L and Mazunin, Ilya O and Shmanai, Vadim V
Journal: Journal of fluorescence (2023)
DNA-Programmed Lipid Nanoreactors for Synthesis of Carbohydrate Mimetics by Fusion of Aqueous Sub-attoliter Compartments.
Authors: Tian, Xinwei and Risgaard, Nikolaj Alexander and Löffler, Philipp M G and Vogel, Stefan
Journal: Journal of the American Chemical Society (2023)
Lactose-modified enzyme-sensitive branched polymers as a nanoscale liver cancer-targeting MRI contrast agent.
Authors: Zhang, Xiaoqin and Wang, Xiaoming and Li, Zhiqian and Du, Jun and Xiao, Xueyang and Pan, Dayi and Zhang, Hu and Tian, Xiaohe and Gong, Qiyong and Gu, Zhongwei and Luo, Kui
Journal: Nanoscale (2023): 809-819
Enhanced imaging of protein-specific palmitoylation with HCR-based cis-membrane multi-FRET.
Authors: Fu, Yixin and Qian, Husun and Yang, Yujun and Li, Junjie and Xie, Guoming
Journal: Talanta (2023): 124972
Efficient Labeling of Nanocellulose for High-Resolution Fluorescence Microscopy Applications.
Authors: Babi, Mouhanad and Fatona, Ayodele and Li, Xiang and Cerson, Christine and Jarvis, Victoria M and Abitbol, Tiffany and Moran-Mirabal, Jose M
Journal: Biomacromolecules (2022): 1981-1994
Click Chemistry-Enabled Conjugation Strategy for Producing Dibenzodiazepinone-Type Fluorescent Probes To Target M2 Acetylcholine Receptors.
Authors: Yang, Hongrong and Micovic, Nicholas and Monaghan, James R and Clark, Heather A
Journal: Bioconjugate chemistry (2022): 2223-2233
Multi-antitumor therapy and synchronous imaging monitoring based on exosome.
Authors: Qian, Ruijie and Jing, Boping and Jiang, Dawei and Gai, Yongkang and Zhu, Ziyang and Huang, Xiaojuan and Gao, Yu and Lan, Xiaoli and An, Rui
Journal: European journal of nuclear medicine and molecular imaging (2022): 2668-2681
An Acidity-Initiated Self-Assembly/Disassembly Nanoprobe to Switch on Fluorescence for Tumor-Targeted Near-Infrared Imaging.
Authors: Luo, Rui and Ou, Chunqing and Li, Xinchao and Wang, Yanfang and Du, Wei and Liang, Gaolin and Gong, Changyang
Journal: Nano letters (2022): 151-156
Chemical Synthesis of a Functional Fluorescent-Tagged α-Bungarotoxin.
Authors: Brun, Oliver and Zoukimian, Claude and Oliveira-Mendes, Barbara and Montnach, Jérôme and Lauzier, Benjamin and Ronjat, Michel and Béroud, Rémy and Lesage, Frédéric and Boturyn, Didier and De Waard, Michel
Journal: Toxins (2022)