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Helixyte™ iFluor® 647 Nucleic Acid Labeling Dye
Optimized for Labeling 100-300 ug DNA/RNA
Helixyte™ iFluor® 647 Nucleic Acid Labeling Dye is a key member of our enabling Helixyte™ nucleic acid labeling and conjugation technology. The labeling/conjugation of a tag/hapten to nucleic acids has been very challenging due to the lack of reactive moieties in nucleic acid molecules. Thymine and guanosine have been often explored for nucleic acid conjugations, e.g., photo-crosslink (to thymine by psoralens) or bromination/Ulysis labeling of guanosine. However, these existing conjugation techniques are either tedious, ineffective or require stringent conditions with low yields and are thus not suitable for routine lab use. Under the similar conditions, our Helixyte™ nucleic acid labeling and conjugation technology is much easier to use with significantly higher yield. Helixyte™ iFluor® 647 Nucleic Acid Labeling Dye provides a unique method to attach the iFluor® 647 fluorophore to nucleic acids via a simple mixing step. The labeling reagent readily reacts with the N7 of guanine to form a stable covalent bond. The labeling procedure is simple and fast with a high production yield. The separation of the labeled nucleic acids from the unreacted dye can be accomplished with a simple ethanol precipitation, a spin-column or dialysis. The resulting labeled DNA/RNA probes have bright red and stable fluorescence that can be easily detected with Cy5 filter set. They can be used for dot, Northern and Southern blots, RNA and DNA in situ hybridization, multicolor fluorescence in situ hybridization (mFISH), comparative genome hybridization (CGH) or microarray analysis etc.
<b>Gel migration and cellular uptake of Helixyte™ iFluor® 647-labeled siRNA.</b> 
(A) Gel pattern for 100 ng each of unlabeled siRNA, 100 µM Helixyte™ iFluor® 647-siRNA, and 200 µM Helixyte™ iFluor® 647-siRNA on a 2% agarose gel stained with CyberOrange. Unlabeled and labeled siRNAs showed similar migration patterns. Notably, labeled siRNAs appeared as red bands under a Cy5 filter, while unlabeled siRNA was visible as blue under a Sypro Ruby filter.
(B) Fluorescence microscopy of HeLa cells transfected with 50 nM Helixyte™ iFluor® 647-labeled siRNA using Transfectamine 7000. Observations at 24, 48, and 72 hours post-transfection under a Cy5 filter demonstrated successful siRNA uptake detected as early as 24 hours, with fluorescence intensity increasing over time, indicating progressive cellular incorporation of labeled siRNA.
<b>Gel migration and cellular uptake of Helixyte™ iFluor® 647-labeled siRNA.</b> 
(A) Gel pattern for 100 ng each of unlabeled siRNA, 100 µM Helixyte™ iFluor® 647-siRNA, and 200 µM Helixyte™ iFluor® 647-siRNA on a 2% agarose gel stained with CyberOrange. Unlabeled and labeled siRNAs showed similar migration patterns. Notably, labeled siRNAs appeared as red bands under a Cy5 filter, while unlabeled siRNA was visible as blue under a Sypro Ruby filter.
(B) Fluorescence microscopy of HeLa cells transfected with 50 nM Helixyte™ iFluor® 647-labeled siRNA using Transfectamine 7000. Observations at 24, 48, and 72 hours post-transfection under a Cy5 filter demonstrated successful siRNA uptake detected as early as 24 hours, with fluorescence intensity increasing over time, indicating progressive cellular incorporation of labeled siRNA.
CatalogSize
Price
Quantity
179631 mg
Price
 
Physical properties

SolventDMSO
Spectral properties

Correction factor (260 nm)0.03
Correction factor (280 nm)0.03
Correction factor (656 nm)0.0793
Extinction coefficient (cm -1 M -1)
250000
1
Excitation (nm)656
Emission (nm)670
Quantum yield
0.25
1
Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22
StorageFreeze (< -15 °C); Minimize light exposure
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Page updated on December 15, 2025