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Psoralen MOP Alkyne

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Physical properties
Molecular weight325.32
SolventDMSO
Storage, safety and handling
H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22
StorageFreeze (< -15 °C); Minimize light exposure

OverviewpdfSDSpdfProtocol


See also: Click Chemistry
Molecular weight
325.32
Psoralen MOP Alkyne is an excellent building block for developing site-specific nucleic acid probes via the well-known click chemistry, i.e., Copper-Catalyzed Azide–Alkyne Cycloaddition (CuAAC). It can be readily conjugated to azido-containing biomolecules (such as azido-modified antibodies, peptide azides and azido-modified oligos). Psoralens and their derivatives (such as 8-MOP and 4,5’8-TMP) are well known to have unique crosslinking features to DNA. However, psoralen monomers do not have sequence-specific crosslinking ability with a target DNA. Nakao et al found that 5-MOP more effectively crosslinks DNA compared to the well-known 8-MOP (https://doi.org/10.1002/cbic.202200789). Psoralen MOP Alkyne is an azide-reactive 5-MOP derivative. It is an excellent building block for preparing MOP-labeled oligos from an azido-modified oligo. The 5-MOP-conjugated oligonucleotides can be used for sequence-specific crosslinking with a target DNA, thus enabling the application of psoralen-conjugated molecules in gene transcription inhibition, gene knockout, and other genomic applications.

Calculators


Common stock solution preparation

Table 1. Volume of DMSO needed to reconstitute specific mass of Psoralen MOP Alkyne to given concentration. Note that volume is only for preparing stock solution. Refer to sample experimental protocol for appropriate experimental/physiological buffers.

0.1 mg0.5 mg1 mg5 mg10 mg
1 mM307.39 µL1.537 mL3.074 mL15.369 mL30.739 mL
5 mM61.478 µL307.39 µL614.779 µL3.074 mL6.148 mL
10 mM30.739 µL153.695 µL307.39 µL1.537 mL3.074 mL

Molarity calculator

Enter any two values (mass, volume, concentration) to calculate the third.

Mass (Calculate)Molecular weightVolume (Calculate)Concentration (Calculate)Moles
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References


View all 27 references: Citation Explorer
UVA and UVB-Induced 8-Methoxypsoralen Photoadducts and a Novel Method for their Detection by Surface-Enhanced Laser Desorption Ionization Time-of-Flight Mass Spectrometry (SELDI-TOF MS).
Authors: Buhimschi, Alexandru D and Gasparro, Francis P
Journal: Photochemistry and photobiology (2014): 241-6
Sak1 kinase interacts with Pso2 nuclease in response to DNA damage induced by interstrand crosslink-inducing agents in Saccharomyces cerevisiae.
Authors: Munari, Fernanda M and Revers, Luis F and Cardone, Jacqueline M and Immich, Bruna F and Moura, Dinara J and Guecheva, Temenouga N and Bonatto, Diego and Laurino, Jomar P and Saffi, Jenifer and Brendel, Martin and Henriques, João A P
Journal: Journal of photochemistry and photobiology. B, Biology (2014): 241-53
Psoralen-induced DNA adducts are substrates for the base excision repair pathway in human cells.
Authors: Couvé-Privat, Sophie and Macé, Gaëtane and Rosselli, Filippo and Saparbaev, Murat K
Journal: Nucleic acids research (2007): 5672-82
An in vivo analysis of MMC-induced DNA damage and its repair.
Authors: Lee, Young-Ju and Park, Su-Jung and Ciccone, Samantha L M and Kim, Chong-Rak and Lee, Suk-Hee
Journal: Carcinogenesis (2006): 446-53
3-Alkyl- and 3-aryl-7H-furo[3,2-g]-1-benzopyran-7-ones: synthesis, photoreactivity, and fluorescence properties.
Authors: Körner, Paul
Journal: Archiv der Pharmazie (2002): 187-99
S. cerevisiae has three pathways for DNA interstrand crosslink repair.
Authors: Grossmann, K F and Ward, A M and Matkovic, M E and Folias, A E and Moses, R E
Journal: Mutation research (2001): 73-83
Photobiological studies of new cyclopentene-psoralens.
Authors: Dalla Via, L and Gia, O and Viola, G and Bertoloni, G and Santana, L and Uriarte, E
Journal: Farmaco (Societa chimica italiana : 1989) (1998): 638-44
Duck hepatitis B virus inactivation and 8-methoxypsoralen photoadduct formation in human platelet concentrates.
Authors: Eble, B E and Corash, L
Journal: Photochemistry and photobiology (1998): 700-13
Preferential repair incision of cross-links versus monoadducts in psoralen-damaged plasmid DNA by human cell-free extracts.
Authors: Calsou, P and Sage, E and Moustacchi, E and Salles, B
Journal: Biochemistry (1996): 14963-9
Further characterization of the yeast pso4-1 mutant: interaction with rad51 and rad52 mutants after photoinduced psoralen lesions.
Authors: de Morais, M A and Vicente, E J and Brozmanova, J and Schenberg, A C and Henriques, J A
Journal: Current genetics (1996): 211-8