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AAT Bioquest

What are the advantages of carbocyanine dyes?

Posted January 16, 2024


Answer

Carbocyanine dyes are a class of fluorescent dyes that are widely used in biological applications. Advantages of carbocyanine dyes include: 

  • Exhibit strong fluorescence, making them very useful for a wide range of imaging techniques such as flow microscopy and flow cytometry
  • Exhibit high photostability so they resist degradation and fade relatively slowly when exposed to exciting light, making them useful for long-term imaging experiments
  • Low cell toxicity, so they do not affect basic physiological properties, development or survival of cells
  • Do not transfer detectability from labeled to unlabeled cells 
  • Can penetrate cell membranes easily 
  • Diffuse laterally within cellular membranes, which is useful for labeling cells and tissues with significant intrinsic fluorescence
  • Can be used for retrograde and anterograde labeling, making them useful for tracing neuronal projections 
Additional resources

Direct labeling and visualization of blood vessels with lipophilic carbocyanine dye DiI

Neurodegeneration & Amyloid Staining

MM 4-64 [N-(3-Triethylammoniumpropyl)-4-(6-(4-(diethylamino)phenyl)hexatrienyl)pyridinium dibromide]

DiIC18(3)-DS [1,1-Dioctadecyl-3,3,3,3-tetramethylindocarbocyanine-5,5-disulfonic acid]