Carbocyanine dyes are a class of fluorescent dyes that are widely used in biological applications. Advantages of carbocyanine dyes include:
Exhibit strong fluorescence, making them very useful for a wide range of imaging techniques such as flow microscopy and flow cytometry
Exhibit high photostability so they resist degradation and fade relatively slowly when exposed to exciting light, making them useful for long-term imaging experiments
Low cell toxicity, so they do not affect basic physiological properties, development or survival of cells
Do not transfer detectability from labeled to unlabeled cells
Can penetrate cell membranes easily
Diffuse laterally within cellular membranes, which is useful for labeling cells and tissues with significant intrinsic fluorescence
Can be used for retrograde and anterograde labeling, making them useful for tracing neuronal projections