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AAT Bioquest

What are the causes of noisy sequences?

Posted August 30, 2024


Answer

Noisy sequence refers to unwanted signals or errors that occur during the sequencing process. These can cause the data to be wrongly interpreted. Main causes of noisy sequence include: 

  • Low DNA concentration, which results in low signal intensity necessitating the artificial amplification of background noise by the software
  • Low quality DNA
  • Multiple primer sites
  • Inefficient primer annealing
  • Inadequate primers
  • Noisy data caused due to arbitrary priming of a N-1 primer synthesis
Additional resources

The effect of background noise and its removal on the analysis of single-cell expression data

Sanger Sequencing

Gene Expression Analysis & Genotyping

MagaDye™ 535-ddGTP