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AAT Bioquest

What should I do if I don’t get the resolution needed with my size exclusion chromatography column?

Posted August 23, 2023


Answer

There are several things one can do if they have insufficient resolution with their size exclusion chromatography column. 

  • One thing that can be changed is the viscosity of the sample. The sample may be too viscous, and thus it should be diluted in a buffer. It is ideal to maintain protein concentration at 50 mg/mL. 
  • The sample may contain particles. The column should be re-equilibrated, and the sample should be filtered with a low protein binding filter. 
  • The sample volume may be too large, and one should decrease it properly as recommended by the protocol. 
  • There also may be contamination of the column, and it should always be properly cleaned before being used. 
  • It is important to check the selectivity curve in the recommended guides for the experiment to make sure the correct resin type is being used. 
  • The flow rate may also be too high and contribute to insufficient resolution. One should check the recommendations for the experiment and lower the flow rate. 
  • Lastly, one should minimize volumes in the system, as the sample may be diluted between the injection valve and column inlet, and/or between column outlet and UV flow cell. The volume can be minimized by decreasing tubing diameter and minimizing length. 
  • One can also mount the column directly to the UV cell (without column valve) and remove all unnecessary particles in the flow path. 
Additional resources

Size-Exclusion Chromatography for the Analysis of Protein Biotherapeutics and their Aggregates

ReadiUse™ Bio-Gel P-6 spin column