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AAT Bioquest

What is the workflow of capillary electrophoresis?

Posted May 6, 2024


Answer
  1. Electrolyte Solution Preparation: Weigh and dissolve sodium borate in distilled water. Then adjust the pH using dilute NaOH or HCL and filter using a 0.45 μm membrane filter. Next, degas it under vacuum for 10-15 minutes.
  2. Capillary Preparation: Cut the 50 or 100 μm capillary and flush the capillary with 0.1 M NaOH for 30 minutes. Then rinse with distilled water for 10 minutes, 0.1 M HCl for 10 minutes and then with distilled water again for 10 minutes. Next, fill the capillary with electrolyte solution.
  3. Instrument Calibration: Inject standard markers and adjust the voltage and temperature for optimal separation. Input the data for the peak area and migration time for each marker.
  4. Sample Preparation: Mix sample with buffer and heat at 90-100°C for 5-10 minutes to denature proteins. Centrifuge at 10,000 g for 5 minutes and then inject the sample into the capillary.
  5. Data Analysis: Analyze electropherogram for migration time and peak area and compare them to the standard markers. Next, determine the concentration using the standard curve from the standard marker peaks. 
Additional resources

Capillary Electrophoresis

Gel Electrophoresis

Gelite™ Green Nucleic Acid Gel Staining Kit