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Helixyte™ Total DNA Quantification Assay Kit *4-2000 ng Broad Range*

Product key features

  • High DNA Specificity: Selectively quantifies all DNA species with minimal interference from RNA or proteins.
  • Broad Detection Range: Accurately measures 4–2000 ng of DNA.
  • Ready-to-Use Reagents: Pre-formulated 1X working solution minimizes preparation and ensures consistency.
  • Contaminant Tolerance: Maintains accuracy in the presence of salts, free nucleotides, detergents, and proteins.
  • Fluorescence-Based: Compatible with microplate readers for precise, high-throughput quantification.

Product description

The Helixyte™ Total DNA Quantification Assay Kit offers a streamlined solution for accurately measuring DNA concentrations. With a pre-formulated, ready-to-use working solution, this kit simplifies workflows. Just prepare your sample, mix it with the Helixyte™ Green DNA BR reagent, and measure the DNA concentration using a fluorescence microplate reader.

This assay is optimized for high selectivity toward DNA over RNA, ensuring precise and reproducible quantification. It accommodates a wide range of DNA concentrations and reliably detects 4–2000 ng of DNA. The straightforward protocol involves diluting 1–50 μL of the sample into the provided 1X working solution and recording fluorescence intensity.

The kit is designed to tolerate common contaminants, including salts, free nucleotides, solvents, detergents, and proteins, minimizing interference and maximizing accuracy. Its highly specific formulation ensures superior detection of DNA over RNA and protein, making it ideal for a range of research and diagnostic applications requiring reliable and precise DNA quantitation.

Example protocol

AT A GLANCE

Protocol Summary
  1. Add test samples (50 µL)

  2. Add Helixyte™ Green DNA BR reagent working solution (50 µL)

  3. Incubate at room temperature for 2 minutes

  4. Monitor fluorescence intensity at Ex/Em = 490/530 nm

Important: The following protocol serves as an example for quantifying total DNA with Helixyte™ Green DNA BR. Ensure all components are brought to room temperature before opening. Please note that no data are available for the mutagenicity or toxicity of Helixyte™ Green DNA BR stain. As this reagent binds to nucleic acids, it should be treated as a potential mutagen and handled with appropriate care. Exercise particular caution when handling the DMSO stock solution, as DMSO is known to facilitate the absorption of organic molecules into tissues.

PREPARATION OF STANDARD SOLUTIONS

For convenience, use the Serial Dilution Planner:
https://www.aatbio.com/tools/serial-dilution/17633

DNA Standard
Add 80 μL of 100 μg/mL DNA Standard Solution (Component C) to 120 μL Assay Buffer (Component B) to generate 40 μg/mL DNA standard solution. Then perform 1:2 serial dilutions by Assay Buffer (Component B) to get serially diluted dsDNA standards ranging from 0 to 40 μg/mL.

PREPARATION OF WORKING SOLUTION

Helixyte™ Green DNA BR Working Solution (2X)
  1. Add 50 μL of Helixyte™ Green DNA BR (Component A) to 2.5 mL of DNA Assay Buffer (Component B) and mix thoroughly. Protect the working solution from light by covering it with foil or storing it in the dark.

    Note: We recommend preparing this solution in a plastic container rather than glass, as the dye may adsorb to glass surfaces. For optimal results, use this solution within 2 hours of preparation.

SAMPLE EXPERIMENTAL PROTOCOL

Table 1. Layout of dsDNA standards and test samples in a solid black 96-well microplate. DS=DNA Standards (DS1-DS13, 40 to 0.0098 μg/mL); BL=Blank Control; TS=Test Samples.

BL
BL
DS8
DS8
DS1
DS1
DS9
DS9
DS2
DS2
DS10
DS10
DS3
DS3
DS11
DS11
DS4
DS4
DS12
DS12
DS5
DS5
DS13
DS13
DS6
DS6
TS
TS
DS7
DS7
TS
TS

Table 2. Reagent composition for each well.

Well
Volume
Reagent
DS1–DS7
50 µL
Serial Dilutions (40 to 0.0098 μg/mL)
BL
50 µL
Assay Buffer
TS
50 µL
Test Sample
  1. Prepare DNA Standards (DS), blank controls (BL), and test samples (TS) according to the layout provided in Tables 1 and 2. For a 384-well plate, use 25 μL of reagent per well instead of 50 μL.

  2. Add 50 μL of 2X working solution to each well containing DNA Standard, blank control, and test samples to achieve a total DNA assay volume of 100 μL/well. For a 384-well plate, add 25 μL of 2X working solution to each well, resulting in a total volume of 50 μL/well.

  3. Incubate the reaction at room temperature for 2 minutes, protected from light.

  4. Monitor the fluorescence intensity with a fluorescence plate reader at Ex/Em = 490/530 nm (cut off at 515nm).

Data Analysis

For data analysis, we recommend using the Online Linear Regression Calculator available here. This tool facilitates linear, logarithmic, and semi-log regression analysis to help interpret your experimental results.

Page updated on May 13, 2025

Ordering information

Price
Unit size
Catalog Number17633
Quantity
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Additional ordering information

Telephone1-800-990-8053
Fax1-800-609-2943
Emailsales@aatbio.com
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Purchase orderSend to sales@aatbio.com
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Physical properties

Solvent

DMSO

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Freeze (< -15 °C); Minimize light exposure

Platform

Fluorescence microplate reader

Excitation490 nm
Emission530 nm
Cutoff515 nm
Recommended plateSolid black

Components

Comparison of dsDNA, ssDNA, and RNA detection using the Helixyte™ Total DNA Quantitation Assay Kit in a 96-well solid black plate.
Comparison of dsDNA, ssDNA, and RNA detection using the Helixyte™ Total DNA Quantitation Assay Kit in a 96-well solid black plate.
Comparison of dsDNA, ssDNA, and RNA detection using the Helixyte™ Total DNA Quantitation Assay Kit in a 96-well solid black plate.
DNA dose response measured with Helixyte™ Total DNA Quantitation Assay Kit in a 96-well solid black plate.
dsDNA, ssDNA, and RNA dose response measured with Helixyte™ Total DNA Quantitation Assay Kit in a 96-well solid black plate.