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Protonex™ Red 670-E. coli Conjugate

Product key features

The Protonex™ Red 670–E. coli Conjugate provides a ready-to-use, pH-sensitive fluorescent tool for monitoring phagocytosis and intracellular acidification processes in live cells.

  • pH-activated fluorescence: Non-fluorescent at neutral pH and becomes strongly fluorescent in acidic compartments such as phagosomes and phagolysosomes.
  • E. coli-based targeting: E. coli particles serve as biologically relevant substrates that mimic bacterial infection and are efficiently recognized by phagocytes.
  • Multipurpose reagent: Suitable for incorporation into custom assay workflows for microscopy, flow cytometry, or plate-based readouts.

Product description

The Protonex™ Red 670-E. coli Conjugate is a ready-to-use reagent designed to study phagocytosis and phagosome acidification in live cells. This conjugate combines E. coli particles, a biologically relevant model of bacterial uptake, with Protonex™ Red 670, a novel pH-sensitive fluorophore that remains non-fluorescent at neutral pH and becomes highly fluorescent upon entering acidic environments such as maturing phagosomes and phagolysosomes.
As a standalone reagent, it enables users to integrate phagocytic detection into their own custom assays. The Cy5-like excitation/emission properties of Protonex™ Red 670 make it compatible with a wide range of fluorescence imaging and detection systems. These conjugates can be used in combination with green fluorescent dyes like GFP, Calbryte™ 520, calcein AM, or FITC-labeled antibodies for multiplexed cell functional analysis. It is ideal for immunological research, drug discovery, and mechanistic studies of innate immune function, autophagy, or bacterial clearance.

Example protocol

AT A GLANCE

  1. Plate the cells.
  2. Treat cells with test compounds.
  3. Add Protonex Dye E. coli conjugates in medium.
  4. Incubate at 37°C for 60 minutes.
  5. Monitor fluorescence by microscope or fluorescence plate reader.

CELL PREPARATION

For guidelines on cell sample preparation, please visit:

https://www.aatbio.com/resources/guides/cell-sample-preparation.html

Preparing Adherent Cells
  1. Plate cells overnight in a growth medium at 20,000-50,000 cells/well/100 µL in a 96-well plate.

Note:  For RAW 264.7 cells used in this assay, we recommend plating 50,000 cells per well in 100 µL of medium in a 96-well plate and incubating them overnight. It is important to optimize the cell density for each cell line individually.

Note: Higher background fluorescence levels may be seen with poly-D-lysine coated microplates.

SAMPLE EXPERIMENTAL PROTOCOL

Treatment of cells:

Add phagocytosis inhibitor (e.g., Cytochalasin D ) at the desired concentrations. You may need to add vehicle controls to untreated wells. (For example: 11X working solution can be prepared in PBS, and 10 µL can be added to each well.)
Note: The time and concentration of phagocytosis effectors varies with cell types.

Adding the Fluorescent E. coli Cojugate
  1. Add the suspension of E. coli conjugate to the cell culture microplate in a 1:10 dilution, or 10 μL of particles added to 100 μL of cell culture medium, and mix well.
  2. Place the cells at 37°C for 60 minutes to 3 hours.
Fluorescence Measurements:
  1. Wash the cells 2-3 times with HHBS Buffer (AAT Cat# 20011) or buffer of your choice.
  2. Add 100 µL HHBS Buffer to each well.
  3. Observe plate with a fluorescence microscope using the following filter set or read plate in a fluorescence plate reader with bottom read mode.

Spectrum

Product family

NameExcitation (nm)Emission (nm)
Protonex™ Red 600-E. coli Conjugate576597

References

View all 50 references: Citation Explorer
Combating Pathogenic Immune Evasion: Sialidase-Activated Thermally Delayed Fluorescence for Probing and Modulating Host-Pathogen Interactions.
Authors: Liu, Qian and Wang, Qinghua and Meng, Xiangchuan and Wang, Xiang and Zhang, Qingyang and Hu, Hai-Yu
Journal: ACS sensors (2025): 1072-1082
Imaging and speciation of intracellular metallic implant debris using synchrotron-based X-ray fluorescence micro-spectroscopy: a study of two cases.
Authors: Liu, Songyun and Chen, Si and Lai, Barry and Antipova, Olga and Luo, Yanqi and Hall, Deborah J and Jin, Qiaoling and Maxey, Evan and Jacobs, Joshua J and Pourzal, Robin
Journal: Scientific reports (2025): 12467
The influence of cation exchange on the possible mechanism of erionite toxicity: A synchrotron-based micro-X-ray fluorescence study on THP-1-derived macrophages exposed to erionite-Na.
Authors: Raneri, Simona and Gianoncelli, Alessandra and Bonanni, Valentina and Mirata, Serena and Scarfì, Sonia and Fornasini, Laura and Bersani, Danilo and Baroni, Debora and Picco, Cristiana and Gualtieri, Alessandro F
Journal: Environmental research (2024): 118878
Aqueous Grown Quantum Dots with Robust Near-Infrared Fluorescence for Integrated Traumatic Brain Injury Diagnosis and Surgical Monitoring.
Authors: Jiao, Mingxia and Li, Xiaoqi and Liu, Hui and Cai, Peng and Yang, Xiling and McHugh, Kevin J and Zheng, Bowen and Sun, Jiachen and Zhang, Peisen and Luo, Xiliang and Jing, Lihong
Journal: ACS nano (2024): 19038-19053
Multi-color fluorescence live-cell imaging in Dictyostelium discoideum.
Authors: Hashimura, Hidenori and Kuwana, Satoshi and Nakagawa, Hibiki and Abe, Kenichi and Adachi, Tomoko and Sugita, Toyoko and Fujishiro, Shoko and Honda, Gen and Sawai, Satoshi
Journal: Cell structure and function (2024): 135-153
Page updated on July 17, 2025

Ordering information

Price
Unit size
Catalog Number21237
Quantity
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Additional ordering information

Telephone1-800-990-8053
Fax1-800-609-2943
Emailsales@aatbio.com
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Purchase orderSend to sales@aatbio.com
ShippingStandard overnight for United States, inquire for international
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Physical properties

Solvent

Spectral properties

Excitation (nm)

643

Emission (nm)

660

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Refrigerated (2-8 °C); Minimize light exposure

Platform

Fluorescence microscope

ExcitationCy5
EmissionCy5
Recommended plateBlack wall, clear bottom

Fluorescence microplate reader

Excitation635nm
Emission670nm
Recommended plateBlack wall, clear bottom
Instrument specification(s)Bottom read mode
Examination of phagocytosis in RAW 264.7 cells using Protonex™ Red 670-E. coli Conjugate (Cat #21237). RAW 264.7 cells were incubated with Cytochalasin D (to inhibit phagocytosis) followed by incubation with PProtonex™ Red 670-E. coli Conjugate for 60 minutes. The images were acquired using Keyence fluorescence microscope.
Examination of phagocytosis in RAW 264.7 cells using Protonex™ Red 670-E. coli Conjugate (Cat #21237). RAW 264.7 cells were incubated with Cytochalasin D (to inhibit phagocytosis) followed by incubation with PProtonex™ Red 670-E. coli Conjugate for 60 minutes. The images were acquired using Keyence fluorescence microscope.
Examination of phagocytosis in RAW 264.7 cells using Protonex™ Red 670-E. coli Conjugate (Cat #21237). RAW 264.7 cells were incubated with Cytochalasin D (to inhibit phagocytosis) followed by incubation with PProtonex™ Red 670-E. coli Conjugate for 60 minutes. The images were acquired using Keyence fluorescence microscope.