What are the major steps of Fluorescence in situ hybridization (FISH) method?
Posted March 27, 2024
Answer
The major steps of FISH are described in numerical order below.
- Probe Preparation: Short sequences of single-stranded DNA (known as probes) are prepared to target a specific portion of the gene or genomic region of interest.
- Probe Labeling: The DNA probes are labeled using various techniques such as random primed labeling, nick translation, or PCR. The two labeling methods are direct labeling and indirect labeling.
- Direct Labeling: Probes are directly labeled with nucleotides using a fluorophore
- Indirect Labeling: Probes are labeled with modified nucleotides using a hapten
- Denaturation: Both the labeled probe and the target DNA are denatured, separating the double-stranded DNA into single strands.
- Hybridization: The denatured probe and target DNA are combined, allowing for the annealing of complementary DNA sequences. This results in the binding of the labeled probe to its complementary target sequence.
- Washing: During the washing step, excess, unbound probes are removed from the sample.
- Detection: In the case of indirect labeling, an additional step is required for visualization of the non-fluorescent hapten. This typically involves using an enzymatic or immunological detection system to detect the presence of the hapten-labeled probe.
Additional resources
Fluorescence In Situ Hybridization (FISH)