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ReadiLink™ Rapid XFD647 Antibody Labeling Kit *Production Scale*

HeLa cells were labeled with mouse anti-tubulin followed by a goat anti-mouse IgG conjugated to XFD647 using the ReadiLink™ Rapid XFD647 Antibody Labeling Kit (Cat No. 5740).
HeLa cells were labeled with mouse anti-tubulin followed by a goat anti-mouse IgG conjugated to XFD647 using the ReadiLink™ Rapid XFD647 Antibody Labeling Kit (Cat No. 5740).
HeLa cells were labeled with mouse anti-tubulin followed by a goat anti-mouse IgG conjugated to XFD647 using the ReadiLink™ Rapid XFD647 Antibody Labeling Kit (Cat No. 5740).
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Telephone1-800-990-8053
Fax1-800-609-2943
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Spectral properties
Correction Factor (260 nm)0.00
Correction Factor (280 nm)0.03
Extinction coefficient (cm -1 M -1)239000
Excitation (nm)650
Emission (nm)671
Quantum yield0.331
Storage, safety and handling
H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22
UNSPSC12171501
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OverviewpdfSDSpdfProtocol


Correction Factor (260 nm)
0.00
Correction Factor (280 nm)
0.03
Extinction coefficient (cm -1 M -1)
239000
Excitation (nm)
650
Emission (nm)
671
Quantum yield
0.331
ReadiLink™ Rapid Antibody Labeling Kits, designed for production scale, provide a convenient and efficient method for labeling large volumes of antibodies with our superior iFluor® dyes, XFD dyes (equivalent to Alexa Fluor®), and various other labels. These kits utilize reactive fluorophores modified with succinimidyl ester (SE) functional groups, which selectively bind to primary amines on proteins, resulting in remarkably bright and photostable conjugates. Every kit contains all the necessary components for three distinct labeling reactions and features a user-friendly, pre-packed spin column for efficient dye removal, maximizing conjugate yield. Each vial of XFD647 dye provided in the kit is precisely formulated to label 1 mg of purified protein or antibody. Before labeling, it is important to remove stabilizing proteins like BSA from the sample and refrain from using amine-rich buffers like Tris, which might disrupt the labeling process. The dye XFD647 is a bright, far-red fluorescent dye with an excitation and emission maxima of ~650 nm and ~671 nm, respectively. The structure of XFD647 is identical to that of Alexa Fluor® 647, making XFD647 conjugates an excellent alternative for imaging and flow cytometry applications. With ReadiLink™ Rapid Antibody Labeling kits, researchers can directly label primary antibodies, eliminating the need for secondary antibodies and enhancing panel-building flexibility.

Components


Example protocol


AT A GLANCE

Key Parameters for Optimal Results
  1. 1.0 mg Antibody (MW ~150 kDa)

  2. Antibody concentration: 2.0 mg/mL

  3. Antibody volume: 500 µL

SAMPLE EXPERIMENTAL PROTOCOL

Important

Before opening the vials, warm all components and briefly centrifuge. Immediately prepare necessary solutions before starting conjugation. This protocol is a recommendation.

Antibody Labeling Reaction
  1. Warm up a vial of reactive dye (Component A) to room temperature.

    Note: Each vial of reactive dye contains an optimized amount of dye to label 1 mg of IgG (MW ~150 kDa) at 2 mg/mL in PBS, the kit can also be used to label other proteins (>10 kDa).

  2. Add 10 µL of DMSO (Component D) to the vial of reactive dye (Component A), mix well.

  3. Prepare a 500 µL antibody solution in PBS with a concentration of 2 mg/mL.

    Note: The protein should be dissolved in 1X phosphate buffered saline (PBS), pH 7.2 - 7.4. If the protein is dissolved in buffers containing primary amines, like Tris and/or glycine, it must be dialyzed against 1X PBS, pH 7.2 - 7.4, or use Amicon Ultra0.5, Ultracel-10 Membrane, 10 kDa (Cat No. UFC501008 from Millipore) to remove free amines or ammonium salts (such as ammonium sulfate and ammonium acetate) that are widely used for protein precipitation.

    Note: Impure antibodies or antibodies stabilized with bovine serum albumin (BSA) or gelatin will not be labeled well.

  4. Add 25 µL of Reaction Buffer (Component B) to the antibody solution.

  5. Transfer the reconstituted dye solution into the vial of antibody solution, and pipette several times to mix well.

  6. Rotate the reaction mixture for 1 hour at room temperature.

Purification with Desalting Column
  1. Twist off the bottom closure of the desalting column (Component D), and loosen the cap. Place the column in a collection tube.

  2. Centrifuge the column at 1,000 g for 2 minutes to remove the storage solution.

  3. Remove the cap and slowly add 1 mL of PBS to the column. Centrifuge at 1,000 g for 2 minutes and remove the buffer. Repeat this step 3 additional times, discarding the buffer from the collection tube each time.

  4. Place the column in a new collection tube, and gently apply the sample into the center of the compact resin bed.

  5. Centrifuge the column at 1,000 g for 2 minutes to collect the sample.

Determine the Antibody Concentration & Degree of Labeling (Optional)

The following formula can be used to calculate the antibody concentration:

(A280 - CF280 x Adye) / 1.4

The following formula can be used to calculate the degree of labeling:

DOL = (Adye / Ecdye) / (A280 - CF280 x Adye) / 210,000)

Where: 

  • 210,000 is the molar extinction coefficient (Ec) in cm-1M-1 of IgG at 280 nm.
  • CF280 is the correction factor for the effect of the fluorophore on absorbance at 280 nm.
  • Adye is the absorbance at maximum (λmax) for the respective dye.

Table 1. Properties of Labeling Dyes found in the ReadiLink™ Rapid Antibody Labeling Kits.

Cat#

Dye

Mol. Wt.

Ec (cm-1M-1)

CF280

Target DOL

5700

iFluor® 350

749.85

20,000

0.23

5-10

5702

iFluor® 488

945.07

75,000

0.21

4-8

5705

iFluor® 555

914.06

90,000

0.16

4-7

5710

iFluor® 594

1160.42

18,000

0.04

3-6

5713

iFluor® 647

1274.66

250,000

0.03

3-7

5718

iFluor® 750

1416.83

250,000

0.039

2-6

5720

FITC

620.52

75,000

0.183

3-6

5722

Cy3

829.03

150,000

0.073

1-3

5725

Cy5

855.07

250,000

0.03

2-4

5727

Cy7

881.11

250,000

0.036

2-4

5730

XFD488

643.4

71,000

0.11

4-8

5733

XFD555

1250

150,000

0.08

4-7

5736

XFD594

819.85

90,000

0.56

3-6

5740

XFD647

1259.66

240,000

0.03

3-7

5745

XFD750

1300

240,000

0.04

2-5

Spectrum


Open in Advanced Spectrum Viewer
spectrum

Spectral properties

Correction Factor (260 nm)0.00
Correction Factor (280 nm)0.03
Extinction coefficient (cm -1 M -1)239000
Excitation (nm)650
Emission (nm)671
Quantum yield0.331

Product Family


NameExcitation (nm)Emission (nm)Extinction coefficient (cm -1 M -1)Quantum yieldCorrection Factor (280 nm)Correction Factor (260 nm)
ReadiLink™ Rapid FITC Antibody Labeling Kit *Microscale Optimized for Labeling 50 μg Antibody Per Reaction*491516730000.920.35-
ReadiLink™ Rapid Cy3 Antibody Labeling Kit *Microscale Optimized for Labeling 50 μg Antibody Per Reaction*55556915000010.1510.0730.07
ReadiLink™ Rapid Cy5 Antibody Labeling Kit *Microscale Optimized for Labeling 50 μg Antibody Per Reaction*65167025000010.271, 0.420.030.02
ReadiLink™ Rapid Cy7 Antibody Labeling Kit *Microscale Optimized for Labeling 50 μg Antibody Per Reaction*7567792500000.30.0360.05
ReadiLink™ Rapid XFD488 Antibody Labeling Kit *XFD488 Same Structure to Alexa Fluor™ 488*499520710000.9210.110.30
ReadiLink™ Rapid XFD555 Antibody Labeling Kit *XFD555 Same Structure to Alexa Fluor™ 555*5535681500000.110.080.08
ReadiLink™ Rapid XFD594 Antibody Labeling Kit *XFD594 Same Structure to Alexa Fluor™ 594*590618900000.6610.560.43
ReadiLink™ Rapid XFD750 Antibody Labeling Kit *XFD750 Same Structure to Alexa Fluor™ 750*7527762400000.1210.040.00
ReadiLink™ Rapid FITC Antibody Labeling Kit *Production Scale*491516730000.920.35-
ReadiLink™ Rapid Cy3 Antibody Labeling Kit *Production Scale*55556915000010.1510.0730.07
ReadiLink™ Rapid Cy5 Antibody Labeling Kit *Production Scale*65167025000010.271, 0.420.030.02
ReadiLink™ Rapid XFD488 Antibody Labeling Kit *Production Scale*499520710000.9210.110.30
ReadiLink™ Rapid XFD555 Antibody Labeling Kit *Production Scale*5535681500000.110.080.08
ReadiLink™ Rapid XFD594 Antibody Labeling Kit *Production Scale*590618900000.6610.560.43
ReadiLink™ Rapid Cy7 Antibody Labeling Kit *Production Scale*7567792500000.30.0360.05
ReadiLink™ Rapid XFD750 Antibody Labeling Kit *Production Scale*7527762400000.1210.040.00
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Images


References


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Mechanism of Cyanine5 to Cyanine3 Photoconversion and Its Application for High-Density Single-Particle Tracking in a Living Cell.
Authors: Cho, Yoonjung and An, Hyeong Jeon and Kim, Taehoon and Lee, Chulbom and Lee, Nam Ki
Journal: Journal of the American Chemical Society (2021): 14125-14135
Molecular and Spectroscopic Characterization of Green and Red Cyanine Fluorophores from the Alexa Fluor and AF Series*.
Authors: Gebhardt, Christian and Lehmann, Martin and Reif, Maria M and Zacharias, Martin and Gemmecker, Gerd and Cordes, Thorben
Journal: Chemphyschem : a European journal of chemical physics and physical chemistry (2021)
Optimization of fluorophores for chemical tagging and immunohistochemistry of Drosophila neurons.
Authors: Meissner, Geoffrey W and Grimm, Jonathan B and Johnston, Rebecca M and Sutcliffe, Ben and Ng, Julian and Jefferis, Gregory S X E and Cachero, Sebastian and Lavis, Luke D and Malkesman, Oz
Journal: PloS one (2018): e0200759
Toxicity of organic fluorophores used in molecular imaging: literature review.
Authors: Alford, Raphael and Simpson, Haley M and Duberman, Josh and Hill, G Craig and Ogawa, Mikako and Regino, Celeste and Kobayashi, Hisataka and Choyke, Peter L
Journal: Molecular imaging (2009): 341-54
Possible sources of dye-related signal correlation bias in two-color DNA microarray assays.
Authors: Cox, W Gregory and Beaudet, Matthew P and Agnew, Jakyoung Y and Ruth, Jerry L
Journal: Analytical biochemistry (2004): 243-54
Quantitative comparison of long-wavelength Alexa Fluor dyes to Cy dyes: fluorescence of the dyes and their bioconjugates.
Authors: Berlier, Judith E and Rothe, Anca and Buller, Gayle and Bradford, Jolene and Gray, Diane R and Filanoski, Brian J and Telford, William G and Yue, Stephen and Liu, Jixiang and Cheung, Ching-Ying and Chang, Wesley and Hirsch, James D and Beechem, Joseph M and Haugland, Rosaria P and Haugland, Richard P
Journal: The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society (2003): 1699-712
Investigating the role of Natural Killer T-cells in Gram negative infections of patients with type 2 diabetes mellitus.
Authors: Karagianni, P and Polyzos, S A and Bougiouklis, D and Tsapas, A and Paletas, K
Journal: Hippokratia : 231-4