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Cell Meter™ Fluorimetric Phagocytosis Assay Kit *Green Fluorescence*

Product key features

The Cell Meter™ Fluorimetric Phagocytosis Assay Kit enables robust and sensitive detection of phagocytic activity in live cells using a unique pH-sensitive fluorescent conjugate.

  • pH-activated fluorescence detection: Utilizes Protonex™ Green 500-Zymosan conjugate, a pH-responsive, non-fluorescent probe that fluoresces strongly in acidic phagosomes and phagolysosomes.
  • Dual-color assay format: Includes a red fluorescent viability dye to simultaneously assess cell viability (red) and phagocytic function (green).
  • Flexible readout platforms: Optimized for analysis via fluorescence microscopy, microplate reader, or flow cytometry.

Product description

The Cell Meter™ Fluorimetric Phagocytosis Assay Kit (Green Fluorescence) is designed to evaluate phagocytic activity in live cells. It is cellular process in which cells engulf and digest particles, such as pathogens or cellular debris, to maintain homeostasis. It features a ready-to-use suspension of Zymosan particles conjugated to Protonex™ Green 500, a novel pH-sensitive dye. Unlike traditional fluorophores, Protonex™ Green 500 is non-fluorescent at neutral pH, becoming highly fluorescent only upon acidification making it ideal for monitoring internalization and lysosomal fusion during phagocytosis. Once engulfed, the Zymosan conjugates are trafficked into acidic phagosomes/phagolysosomes, where the Protonex™ Green 500 dye is activated. The spectral property of the dye is similar to that of FITC, allowing for seamless integration into existing FITC-compatible detection workflows.

The kit also contains a red fluorescent viability dye to enable multiplexed analysis of live cells and phagocytosis within the same assay. This two-color system provides a powerful and versatile tool for studying the dynamics and regulation of phagocytosis in various biological and immunological contexts. Suitable for applications in immunology, drug screening, and cellular function research, the assay is compatible with fluorescence microscopy, flow cytometry, and microplate-based formats.

Example protocol

AT A GLANCE

Protocol Summary
  1. Plate cells.

  2. Add Protonex™ Green 500-Zymosan Beads Conjugate solution.

  3. Incubate at 37 °C for 60 minutes.

  4. Add CytoTrace™ Red.

  5. Incubate at 37 °C for 30 minutes.

  6. Monitor fluorescence by microscopy using FITC and Texas Red filters.

Important Note

Thaw all the kit components to room temperature before starting the experiment.

CELL PREPARATION

For guidelines on cell sample preparation, please visit:

https://www.aatbio.com/resources/guides/cell-sample-preparation.html

Preparing Adherent Cells
  1. Plate cells overnight in a growth medium at 20,000-50,000 cells/well/100 µL in a 96-well plate.

    Note: For the RAW 264.7 cells used in this assay, we recommend plating 50,000 cells per well in 100 µL of medium in a 96-well plate and incubating them overnight. It is important to optimize the cell density for each cell line individually.

PREPARATION OF STOCK SOLUTIONS

Unless otherwise noted, all unused stock solutions should be divided into single-use aliquots and stored at -20 °C after preparation. Avoid repeated freeze-thaw cycles

CytoTrace™ Red Stock Solution (400X)
  1. Add 20 µL of DMSO (Component C) to the vial containing CytoTrace™ Red (Component B), and mix thoroughly.

    Note: Please prepare the stock solution before use. Unused 400X CytoTrace™ Red stock solution in DMSO can be aliquoted into single-use vials and stored at -20 °C, protected from light

PREPARATION OF WORKING SOLUTION

Protonex™ Green 500-Zymosan Beads Conjugate Solution (12X)
  1. Add 150 µL of Protonex™ Red 500-Zymosan Beads Conjugates (Component A) to 1.5mL of cell growth medium (containing 10% FBS), and mix well.

    Note: Unused beads can be stored at 4 °C.

CytoTrace™ Red Working Solution (12X)
  1. Add 5 µL of CytoTrace™ Green stock solution (400X) to 2 mL of cell growth medium and mix well.

    Note: Please prepare the stock solution before use.

SAMPLE EXPERIMENTAL PROTOCOL

Phagocytosis Assay Protocol
  1. For negative control, add 25 µL of 6X Cytochalasin D (not provided). The final concentration in the well should be 10 µM. Similarly, for positive control, add LPS to a final concentration of 250ng/mL. Prepare your test compounds and add to the wells.

    Note: To prepare a 6X Cytochalasin D solution, add 18 µL of 10 mM Cytochalasin D (not included) to 3 mL of cell growth medium, and mix thoroughly. Be sure to optimize the Cytochalasin D and LPS concentration for each specific cell line used in the assay.

    Note: Cytochalasin D and LPS are not provided in the kit.

  2. Incubate the plate in the cell incubator for 30 minutes for Cytochalasin and for 8 hours or more for LPS treatment. 

  3. Add 12.5 µL of the 12X Protonex™ Green 500-Latex Bead Conjugate solution to each well.

  4. Incubate the plate in a cell incubator for 60 minutes.

    Note: The incubation time should be optimized by users for each individual cell lines.

  5. Add 12.5 µL of the 12X CytoTrace™ Red working solution to each well.

  6. Incubate the plate in a cell incubator for 30 minutes.

  7. Wash the plate twice with 1X PBS.

  8. Monitor phagocytosis within the cells using the FITC filter (Ex/Em= 490/525 nm) for green fluorescence, and observe CytoTrace™ Red using the Texas Red filter (Ex/Em = 570/600 nm) for red fluorescence.

Product family

Citations

View all 1 citations: Citation Explorer
Sex-specific activation of platelet purinergic signaling is key in local cytokine release and phagocytosis in the peritoneal cavity in intra-abdominal sepsis
Authors: Entsie, Philomena and Amoafo, Emmanuel Boadi and Kang, Ying and Gustad, Thomas and Dorsam, Glenn P and Frey, Mark R and Liverani, Elisabetta
Journal: American Journal of Physiology-Cell Physiology (2025)

References

View all 21 references: Citation Explorer
Aerobic Exercise Ameliorates Alzheimer's Disease-Like Pathology by Regulating Hepatic Phagocytosis of Aβ.
Authors: Wang, Qing and Hu, Feng-Rui and Gou, Xing-Chun and Wang, Shan and Ji, Nai-Chun
Journal: Frontiers in bioscience (Landmark edition) (2025): 36597
Influence of a Very High-Molecular Weight Fucoidan from Laminaria hyperborea on Age-Related Macular Degeneration-Relevant Pathomechanisms in Ocular Cell Models.
Authors: Dörschmann, Philipp and Kopplin, Georg and Thalenhorst, Tabea and Seeba, Charlotte and Ullah, Sadia Fida and Srivastava, Vaibhav and Roider, Johann and Klettner, Alexa
Journal: Marine drugs (2025)
Effects of Fucoidans on Activated Retinal Microglia.
Authors: Dörschmann, Philipp and Hunger, Florentine and Schroth, Hannah and Chen, Sibei and Kopplin, Georg and Roider, Johann and Klettner, Alexa
Journal: International journal of molecular sciences (2024)
Comparison of Fucoidans from Saccharina latissima Regarding Age-Related Macular Degeneration Relevant Pathomechanisms in Retinal Pigment Epithelium.
Authors: Dörschmann, Philipp and Thalenhorst, Tabea and Seeba, Charlotte and Tischhöfer, Marie-Theres and Neupane, Sandesh and Roider, Johann and Alban, Susanne and Klettner, Alexa
Journal: International journal of molecular sciences (2023)
A Peptide-Fc Opsonin with Pan-Amyloid Reactivity.
Authors: Foster, James S and Williams, Angela D and Macy, Sallie and Richey, Tina and Stuckey, Alan and Wooliver, Daniel Craig and Koul-Tiwari, Richa and Martin, Emily B and Kennel, Stephen J and Wall, Jonathan S
Journal: Frontiers in immunology (2017): 1082
Page updated on June 30, 2025

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Catalog Number21231
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Physical properties

Solvent

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Refrigerated (2-8 °C); Minimize light exposure

Platform

Fluorescence microscope

Recommended plateBlack wall, clear bottom
Instrument specification(s)FITC, Texas Red Filters

Components

Examination of phagocytosis in RAW 264.7 cells using Cell Meter™ Fluorimetric Phagocytosis Assay Kit (Cat# 21231). RAW 264.7 cells were incubated with Cytochalasin D (to inhibit phagocytosis) or LPS (to induce phagocytosis) followed by incubation with Protonex™ Green 500-Zymosan Beads in growth medium for 60 minutes and then stained with CytoTrace™ Red for 30 minutes. The images were acquired using Keyence Fluorescence microscopy.
Examination of phagocytosis in RAW 264.7 cells using Cell Meter™ Fluorimetric Phagocytosis Assay Kit (Cat# 21231). RAW 264.7 cells were incubated with Cytochalasin D (to inhibit phagocytosis) or LPS (to induce phagocytosis) followed by incubation with Protonex™ Green 500-Zymosan Beads in growth medium for 60 minutes and then stained with CytoTrace™ Red for 30 minutes. The images were acquired using Keyence Fluorescence microscopy.
Examination of phagocytosis in RAW 264.7 cells using Cell Meter™ Fluorimetric Phagocytosis Assay Kit (Cat# 21231). RAW 264.7 cells were incubated with Cytochalasin D (to inhibit phagocytosis) or LPS (to induce phagocytosis) followed by incubation with Protonex™ Green 500-Zymosan Beads in growth medium for 60 minutes and then stained with CytoTrace™ Red for 30 minutes. The images were acquired using Keyence Fluorescence microscopy.