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Cell Meter™ Fluorimetric Phagocytosis Assay Kit *Red Fluorescence*

Product key features

Cell Meter™ Fluorimetric Phagocytosis Assay Kit enables sensitive red-fluorescence-based detection of phagocytic activity in live cells.

  • pH-activated fluorescence detection: Uses Protonex™ Red 600-latex beads that fluoresce only upon acidification in phagosomes
  • Dual-color assay format: Includes a green viability dye to concurrently assess live cells and phagocytic function
  • Wide application range: Ideal for studying innate immune responses, drug screening, and cell-based functional assays
  • Comparable alternative: Provides a dual-fluorescence alternative to BioLegend’s Phagocytosis Detection Kit 

Product description

The Cell Meter™ Fluorimetric Phagocytosis Assay Kit (Red Fluorescence) is designed to quantify phagocytic activity in live cells using a pH-activated fluorescence readout. It employs Protonex™ Red 600-latex bead conjugates, which are non-fluorescent at neutral pH but become brightly fluorescent upon acidification within phagosomes and phagolysosomes. This eliminates the need for a trypan blue quenching step and enables precise monitoring of particle internalization and phagosome maturation.

The kit includes a green fluorescent viability dye for dual-color analysis, allowing simultaneous assessment of live cells and phagocytosis. Compatible with fluorescence microscopy, flow cytometry, and plate readers, it offers a flexible and high-throughput solution for studying innate immune responses, cell function, and drug effects on phagocytosis.

Example protocol

AT A GLANCE

Protocol Summary
  1. Plate cells.

  2. Add 12.5 µL Protonex™ Red 600-Latex Bead Conjugates.

  3. Incubate at 37 °C for 4 hours.

  4. Add 12.5 µL CytoTrace™ Green.

  5. Incubate at 37 °C for 30 minutes.

  6. Monitor fluorescence by microscopy using Texas Red and FITC filters.

Important Note

Thaw all the kit components to room temperature before starting the experiment.

CELL PREPARATION

For guidelines on cell sample preparation, please visit:

https://www.aatbio.com/resources/guides/cell-sample-preparation.html

Preparing Adherent Cells
  1. Plate cells overnight in a growth medium at 20,000-50,000 cells/well/100 µL in a 96-well plate.

    Note: For the RAW 264.7 cells used in this assay, we recommend plating 50,000 cells per well in 100 µL of medium in a 96-well plate and incubating them overnight. It is important to optimize the cell density for each cell line individually.

PREPARATION OF STOCK SOLUTIONS

Unless otherwise noted, all unused stock solutions should be divided into single-use aliquots and stored at -20 °C after preparation. Avoid repeated freeze-thaw cycles

Protonex™ Red 600-Latex Bead Conjugate Solution (12X)
  1. Add 8 µL of Protonex™ Red 600-Latex Bead Conjugates (Component A) to 2 mL of cell growth medium (containing 10% FBS), and mix well.

    Note: Unused beads can be stored at 4 °C.

CytoTrace™ Green Stock Solution (400X)
  1. Add 20 µL of DMSO (Component C) to the vial of CytoTrace™ Green (Component B) and mix well.

    Note: Unused CytoTrace™ Green DMSO stock solution can be aliquoted into single-use vials and stored at -20 °C, protected from light.

PREPARATION OF WORKING SOLUTION

CytoTrace™ Green Working Solution (12X)
  1. Add 5 µL of CytoTrace™ Green stock solution (400X) to 2 mL of cell growth medium and mix well.

SAMPLE EXPERIMENTAL PROTOCOL

  1. Add 25 µL of 6X Cytochalasin D (not provided) as a positive control or your test compound into each well. The final concentration in the well should be 10 µM.

    Note: To prepare a 6X Cytochalasin D solution, add 18 µL of 10 mM Cytochalasin D (not included) to 3 mL of cell growth medium, and mix thoroughly. Be sure to optimize the Cytochalasin D concentration for each specific cell line used in the assay.

  2. Incubate the plate in the cell incubator for 30 minutes.

  3. Add 12.5 µL of the 12X Protonex™ Red 600-Latex Bead Conjugate solution to each well.

  4. Incubate the plate in the cell incubator for 4 hours.

    Note: The incubation time should be optimized by users for each individual cell lines.

  5. Add 12.5 µL of the 12X CytoTrace™ Green working solution to each well.

  6. Incubate the plate in the cell incubator for 30 minutes.

  7. Wash the plate twice with 1X PBS.

  8. Observe phagocytosis inside the cells with Texas Red filter (Ex/Em = 570/600 nm) and CytoTrace™ Green with FITC filter (Ex/Em = 490/525 nm).

Spectrum

Product family

Citations

View all 6 citations: Citation Explorer
Sex-specific activation of platelet purinergic signaling is key in local cytokine release and phagocytosis in the peritoneal cavity in intra-abdominal sepsis
Authors: Entsie, Philomena and Amoafo, Emmanuel Boadi and Kang, Ying and Gustad, Thomas and Dorsam, Glenn P and Frey, Mark R and Liverani, Elisabetta
Journal: American Journal of Physiology-Cell Physiology (2025)
An integrated investigation of mitochondrial genes in COPD reveals the causal effect of NDUFS2 by regulating pulmonary macrophages
Authors: Zou, Xiaoli and Huang, Qiqing and Kang, Tutu and Shen, Shaoran and Cao, Chenxi and Wu, Jianqing
Journal: Biology Direct (2025): 4
Methylsulfonylmethane protects against lethal dose MRSA-induced sepsis through promoting M2 macrophage polarization
Authors: Ma, Wei and Ao, Shengxiang and Zhou, Jianping and Li, Jiaxin and Liang, Xin and Yang, Xue and Zhang, Hao and Liu, Boyang and Tang, Wanqi and Liu, Haoru and others,
Journal: Molecular Immunology (2022): 69--77
The N 6-methyladenosine (m6A)-forming enzyme METTL3 facilitates M1 macrophage polarization through the methylation of STAT1 mRNA
Authors: Liu, Yihan and Liu, Zhujiang and Tang, Hao and Shen, Yicong and Gong, Ze and Xie, Nan and Zhang, Xu and Wang, Wengong and Kong, Wei and Zhou, Yuan and others,
Journal: American Journal of Physiology-Cell Physiology (2019): C762--C775
The N6-Methyladenosine (m6A)-Forming Enzyme METTL3 Facilitates M1 Macrophage Polarization through the Methylation of STAT1 mRNA
Authors: Liu, Yihan and Liu, Zhujiang and Tang, Hao and Shen, Yicong and Gong, Ze and Xie, Nan and Zhang, Xu and Wang, Wengong and Kong, Wei and Zhou, Yuan and others, undefined
Journal: American Journal of Physiology-Cell Physiology (2019)

References

View all 56 references: Citation Explorer
Monitoring phospholipid dynamics during phagocytosis: application of genetically-encoded fluorescent probes
Authors: Sarantis H, Grinstein S.
Journal: Methods Cell Biol (2012): 429
Phagocytosis and digestion of pH-sensitive fluorescent dye (Eos-FP) transfected E. coli in whole blood assays from patients with severe sepsis and septic shock
Authors: Schreiner L, Huber-Lang M, Weiss ME, Hohmann H, Schmolz M, Schneider EM.
Journal: J Cell Commun Signal (2011): 135
The application of fluorescent probes for the analysis of lipid dynamics during phagocytosis
Authors: Flannagan RS, Grinstein S.
Journal: Methods Mol Biol (2010): 121
Quantification of microsized fluorescent particles phagocytosis to a better knowledge of toxicity mechanisms
Authors: Leclerc L, Boudard D, Pourchez J, Forest V, Sabido O, Bin V, Palle S, Grosseau P, Bernache D, Cottier M.
Journal: Inhal Toxicol (2010): 1091
Analysis of macrophage phagocytosis: quantitative assays of phagosome formation and maturation using high-throughput fluorescence microscopy
Authors: Steinberg BE, Grinstein S.
Journal: Methods Mol Biol (2009): 45
Page updated on August 10, 2025

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Catalog Number21225
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Physical properties

Solvent

DMSO

Spectral properties

Excitation (nm)

576

Emission (nm)

597

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Freeze (< -15 °C); Minimize light exposure
UNSPSC12352200

Platform

Fluorescence microscope

Recommended plateBlack wall, clear bottom
Instrument specification(s)Texas Red, FITC filter

Components

Examination of phagocytosis in RAW 264.7 cells using Cell Meter&trade; Fluorimetric Phagocytosis Assay Kit (Cat# 21225). RAW 264.7 cells were incubated with (B) or without (A) Cytochalasin D for 30 min before Protonex&trade; 600 Red-Latex Beads in growth medium was added and incubated for 4 hours before Cell Tracker was added and incubated for 30 minutes. The images were taken using Keyence Fluorescence microscopy.&nbsp;
Examination of phagocytosis in RAW 264.7 cells using Cell Meter&trade; Fluorimetric Phagocytosis Assay Kit (Cat# 21225). RAW 264.7 cells were incubated with (B) or without (A) Cytochalasin D for 30 min before Protonex&trade; 600 Red-Latex Beads in growth medium was added and incubated for 4 hours before Cell Tracker was added and incubated for 30 minutes. The images were taken using Keyence Fluorescence microscopy.&nbsp;
Examination of phagocytosis in RAW 264.7 cells using Cell Meter&trade; Fluorimetric Phagocytosis Assay Kit (Cat# 21225). RAW 264.7 cells were incubated with (B) or without (A) Cytochalasin D for 30 min before Protonex&trade; 600 Red-Latex Beads in growth medium was added and incubated for 4 hours before Cell Tracker was added and incubated for 30 minutes. The images were taken using Keyence Fluorescence microscopy.&nbsp;