The Next Generation of Fluorescent Dyes for Biomolecule Labeling
AAT Bioquest's iFluor® dyes are a comprehensive family of water-soluble fluorescent dyes engineered for covalent labeling of proteins, antibodies, peptides, nucleic acids, and other biomolecules. With over 45 spectrally distinct dyes --- including the iFluor® Ultra series --- spanning from UV to near-infrared, iFluor® dyes deliver superior brightness, photostability, and water solubility compared to classic fluorophores such as FITC, Alexa Fluor®, Cy® dyes, and Texas Red®.
Fig. 1
Emission spectra of select iFluor® dyes, ranging from UV to near-infrared (NIR)
iFluor® dyes are trusted across a wide range of biological research applications:
- Fluorescence Microscopy --- Exceptional brightness and photostability make iFluor® dyes ideal for widefield, confocal, and super-resolution imaging of fixed and live cells
- Flow Cytometry --- Full spectral coverage from UV to NIR enables high-dimensional multicolor panels on any cytometer platform
- Antibody & Protein Labeling --- Reactive dye forms and ReadiLink™ rapid labeling kits provide fast, high-yield conjugation to antibodies, proteins, and peptides
- Cell & Tissue Experiments --- Phalloidin, Annexin V, WGA, and secondary antibody conjugates support cell staining, apoptosis detection, membrane labeling, and immunohistochemistry in both cultured cells and tissue sections
Advantage | Details |
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Superior Brightness | High extinction coefficients and quantum yields produce brighter conjugates with lower background than competing dye platforms |
Exceptional Photostability | Resists photobleaching under prolonged excitation, enabling extended imaging sessions and time-lapse experiments |
Full Spectral Coverage | 45+ dyes from 345–860 nm covering every major laser line: 355, 405, 488, 532, 561, 594, 633, 640, 685, 780 nm and beyond |
High Water Solubility | Minimized aggregation and non-specific binding in aqueous buffers for cleaner staining and lower background |
Versatile Chemistry | 10 reactive forms for labeling virtually any biomolecule — amines, thiols, click chemistry handles, and more |
pH Stability | Fluorescence is unaffected across physiological pH ranges (pH 4–10) |
Performance: iFluor® vs. Classic Fluorophores
iFluor® dyes consistently outperform legacy fluorophores in head-to-head comparisons across brightness, photostability, and conjugation yield.
iFluor® 488 is a direct replacement for FITC with dramatically higher fluorescence intensity and photostability in both microscopy and flow cytometry.
Fig. 2
Fluorescence intensity comparison between HeLa cells labeled with GAM IgG-FITC and GAM IgG-iFluor® 488.
Fig. 3
HeLa cells captured on a Keyence X710 fluorescence microscope. Total fluorescence intensity (TFI) calculated by ImageJ confirms iFluor® 488 superiority over FITC.
iFluor® 594 vs. Texas Red®, DyLight® 594, and Alexa Fluor® 594
iFluor® 594 offers an exceptionally high extinction coefficient (200,000 M⁻¹cm⁻¹) and conjugation yield, making it the brightest option in the orange-red channel.
Fig. 4
HeLa cells stained with iFluor® 594 (left panels) or Alexa Fluor® 594 (right panels) secondary conjugates under identical conditions. iFluor® 594 demonstrated significantly lower background and higher signal-to-noise ratio.
iFluor® 700 vs. Alexa Fluor® 700
iFluor® 700 provides stronger 633 nm laser absorption and a higher stain index than Alexa Fluor® 700, making it ideal for multicolor flow cytometry panels.
Fig. 5
Left: Stain index comparison of iFluor® 700 vs. Alexa Fluor® 700. Right: Photostability comparison of APC-iFluor® 700 Tandem vs. APC-Alexa Fluor® 700 tandem.
Scientists use both extinction coefficient (EC) and quantum yield (QY) to evaluate fluorophore performance, as Brightness = EC x QY. The table below lists all iFluor® and iFluor® Ultra dyes with known spectral data, sorted by excitation wavelength.
Dye | Ex/Em (nm) | EC (M⁻¹cm⁻¹) | QY |
|---|
iFluor® 350 | 345/450 | 20,000 | 0.95 |
iFluor® 405 | 403/427 | 37,000 | 0.91 |
iFluor® 430 | 433/497 | 20,000 | 0.78 |
iFluor® 440 | 434/480 | 40,000 | 0.67 |
iFluor® 450 | 451/502 | 40,000 | 0.82 |
iFluor® 460 | 468/493 | 80,000 | 0.80 |
iFluor® 488 | 491/516 | 75,000 | 0.90 |
iFluor® Ultra 488 | 491/516 | 75,000 | 0.90 |
iFluor® 500 | 501/520 | 80,000 | — |
iFluor® 514 | 511/527 | 75,000 | 0.83 |
iFluor® 532 | 537/560 | 90,000 | 0.68 |
iFluor® 546 | 541/557 | 100,000 | 0.67 |
iFluor® 555 | 557/570 | 100,000 | 0.64 |
iFluor® 560 | 560/571 | 120,000 | 0.57 |
iFluor® 568 | 568/587 | 100,000 | 0.57 |
iFluor® 570 | 557/570 | 120,000 | 0.71 |
iFluor® Ultra 594 | 586/600 | 180,000 | 0.52 |
iFluor® 594 | 587/603 | 200,000 | 0.53 |
iFluor® 597 | 598/618 | 100,000 | 0.70 |
iFluor® 605 | 603/623 | — | — |
iFluor® 610 | 610/628 | 110,000 | 0.85 |
iFluor® 620 | 621/636 | — | — |
iFluor® 625 | 624/640 | — | — |
iFluor® 633 | 640/654 | 250,000 | 0.29 |
iFluor® Ultra 647 | 655/670 | 250,000 | 0.39 |
iFluor® 647 | 656/670 | 250,000 | 0.25 |
iFluor® 660 | 663/678 | 250,000 | 0.26 |
iFluor® 665 | 667/692 | 110,000 | 0.22 |
iFluor® 670 | 671/682 | 200,000 | 0.55 |
iFluor® 680 | 684/701 | 220,000 | 0.23 |
iFluor® 690 | 685/704 | 220,000 | 0.30 |
iFluor® 700 | 690/713 | 220,000 | 0.23 |
iFluor® 710 | 716/739 | 150,000 | 0.60 |
iFluor® 720 | 716/740 | 240,000 | 0.14 |
iFluor® 740 | 740/764 | 225,000 | 0.20 |
iFluor® Ultra 750 | 749/773 | 250,000 | 0.32 |
iFluor® 750 | 757/779 | 275,000 | 0.12 |
iFluor® A7 | 764/782 | 275,000 | 0.10 |
iFluor® 770 | 777/797 | 250,000 | 0.16 |
iFluor® 780 | 784/808 | 250,000 | 0.16 |
iFluor® 790 | 787/812 | 250,000 | 0.13 |
iFluor® 800 | 801/820 | 250,000 | 0.11 |
iFluor® 810 | 811/822 | 250,000 | 0.05 |
iFluor® 820 | 822/850 | 250,000 | — |
iFluor® 840 | 836/879 | 200,000 | — |
iFluor® 860 | 853/878 | 250,000 | — |
ReadiLink™ Rapid Antibody Labeling Kits
ReadiLink™ kits let you label your own antibodies with iFluor® dyes in under 30 minutes with no purification required. They use Tide Quencher (TQ) technology to quench unreacted free dye, eliminating background fluorescence without column purification.
Fig. 6
Overview of the ReadiLink™ xtra Rapid Antibody Labeling protocol. In just two simple steps, and with no purification necessary, covalently label microgram amounts of antibodies in under an hour.
Buccutite™ Conjugation Kits
Buccutite™ kits are designed for conjugating phycobiliproteins (PE, APC) and enzymes (HRP, ALP), enabling custom PE and APC tandem conjugation with iFluor® dyes as energy-transfer acceptors.
Ready-to-Use Bioconjugates
iFluor® secondary antibody conjugates are available as goat anti-mouse IgG (H+L) and goat anti-rabbit IgG (H+L) in 20+ iFluor® colors, plus goat anti-human IgG in select colors. Optimized fluorophore-to-protein ratios provide maximum brightness with minimal quenching. Compatible with indirect immunofluorescence, Western blotting, ELISA, and tissue section imaging.
Fig. 7
HeLa cells stained with mouse anti-tubulin followed by iFluor® 488 Goat Anti-Mouse IgG (green, Cat# 16448), Phalloidin-iFluor® 555 Conjugate (red, Cat# 23119), and Hoechst 33342 (blue, Cat# 17530).
Phalloidin-iFluor® conjugates are high-affinity F-actin probes for visualizing and quantifying actin filaments in fixed, permeabilized cells and tissue sections. Phalloidin selectively binds F-actin over monomeric actin, stabilizing filaments and preventing depolymerization. Effective at nanomolar concentrations for high-contrast cytoskeletal imaging.
Available in 15 iFluor® colors: 350, 405, 488, 514, 532, 555, 568, 594, 633, 647, 660, 680, 700, 750, 790
Fig. 8
HeLa cells stained with Phalloidin-iFluor® 680 conjugate (actin filaments) and Nuclear Green DCS1 (nuclei).
Annexin V-iFluor® conjugates detect early-stage apoptosis by binding phosphatidylserine (PS) exposed on the outer leaflet of the plasma membrane --- detectable before morphological changes become observable. Compatible with both flow cytometry and fluorescence microscopy.
Available in 10 iFluor® colors: 350, 488, 555, 568, 594, 633, 647, 680, 700, 750
Fig. 9
Apoptotic Jurkat cells labeled with Annexin V-iFluor® 555 (Cat# 20072) and Nuclear Green DCS1.
iFluor® streptavidin conjugates are high-affinity reagents for biotin-based detection systems. Used as second-step reagents with biotinylated primary antibodies for indirect immunofluorescent staining. Includes tandem variants such as APC-iFluor® 750 and RPE-iFluor® 647/750 streptavidin conjugates.
Available in 19+ iFluor® colors spanning UV to near-infrared (350 through 860)
Wheat germ agglutinin (WGA) conjugates bind N-acetyl-D-glucosamine and sialic acid residues. Applications include plasma membrane staining, yeast bud scar labeling, fibrotic scar tissue visualization, and Gram bacterial cell membrane labeling.
Available in 10 iFluor® colors: 350, 488, 532, 555, 594, 647, 680, 700, 750, 790
iFluor® dUTP conjugates are dye-modified deoxyuridine 5'-triphosphates for enzymatic incorporation into DNA via nick translation, reverse transcription, random primed labeling, or PCR. Used for FISH probe production and microarray-based experiments.
Available in 7 iFluor® colors: 350, 440, 488, 532, 560, 570, 647 --- plus PEG12-linked variants (488, 555, 647)
Pre-conjugated iFluor®-CD antibodies are ready for immunophenotyping by flow cytometry and fluorescence microscopy. Ready-to-use format with pre-validated specificity and optimized fluorophore-to-protein ratios.
CD Targets | 100+ markers including CD3, CD4, CD8, CD14, CD19, CD20, CD25, CD34, CD45, CD56, and many more |
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UV/Violet | iFluor® 350, 405, 430, 450, 488, 514 |
Visible | iFluor® 532, 546, 555, 568, 594 |
Far-Red/NIR | iFluor® 610, 633, 647, 660, 680, 700, 750, 790, 800, 820, 840, 860 |
iFluor® dyes serve as energy-transfer acceptors in tandem conjugates with PE, APC, and PerCP, extending the spectral range of these bright phycobiliproteins into far-red and near-infrared channels for multicolor flow cytometry.
Donor | Tandem Conjugates Available |
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PE | PE-iFluor® 700, PE-iFluor® 750, PE-iFluor® 790 |
APC | APC-iFluor® 700, APC-iFluor® 750, APC-iFluor® 800, APC-iFluor® A7 |
PerCP | PerCP-iFluor® 700, PerCP-iFluor® 710, PerCP-iFluor® 720, PerCP-iFluor® 750, PerCP-iFluor® 780 |
Helixyte™ iFluor® Nucleic Acid Labeling Dyes
Helixyte™ iFluor® dyes enable non-enzymatic fluorescent labeling of DNA, RNA, and oligonucleotides. The dyes react with the N7 position of guanine residues to form a stable coordination complex between the nucleic acid and the fluorophore, with no enzymatic incorporation required. Six fluorophore options are available for multiplexing.
Fig. 10
Helixyte™ iFluor® nucleic acid labeling method. A simple, non-enzymatic workflow for labeling DNA, RNA, and oligonucleotides. The dyes react with the N7 of guanine residues to form a stable coordination complex between the nucleic acid and the fluorophore label.
Power Styramide™ Signal Amplification (PSA™)
Power Styramide™ (PSA™) is an enzymatic amplification technology that couples the brightness and photostability of iFluor® dyes to a horseradish peroxidase (HRP)-mediated Styramide™ reaction. Reactive Styramide™ radicals are generated locally and covalently deposited near the target site, producing over 100-fold signal enhancement compared to conventional ICC, IHC, or ISH methods with minimal background noise.
Feature | PSA™ Performance |
|---|
Sensitivity vs. conventional ICC/IHC | Over 100-fold signal enhancement |
Sensitivity vs. traditional TSA | Up to 50-fold greater, due to enhanced Styramide™ radical reactivity |
Signal stability | Covalent deposition remains stable under stringent conditions including FISH protocols |
Imaging compatibility | Automated slide scanning, confocal microscopy, super-resolution microscopy |
Multiplexing | Multiple biomarkers concurrently without excessive background or cross-talk |
Available Styramide™ reagents | 19 iFluor® colors (350 through 860) |
PSA™ Imaging Kits | Complete kits with goat anti-rabbit, anti-mouse, or anti-human IgG secondaries |
PSA™ is especially valuable for detecting low-abundance targets --- weakly expressed proteins, rare tumor markers, and circulating tumor cells in blood samples --- that might otherwise escape detection with conventional methods. Its robust, reproducible nature and high-throughput compatibility support large-scale analyses without compromising image quality.
Fig. 11
Fluorescence IHC in FFPE human lung adenocarcinoma. Sections stained with HRP-labeled secondary antibody followed by iFluor® 555 Styramide™ (Left) or Alexa Fluor® 555 tyramide (Right). iFluor® Styramide™ shows markedly higher signal intensity.
Fig. 12
Sequential multiplexed immunostaining of FFPE human lung adenocarcinoma using iFluor® 488 PSA™ Imaging Kit (EpCAM, green) and iFluor® 555 PSA™ Imaging Kit (Pan-Keratin, red). Nuclei stained with DAPI (blue).
iFluor®, ReadiLink™, Buccutite™, Tide Quencher™, Styramide™, and Helixyte™ are trademarks of AAT Bioquest, Inc. Alexa Fluor® is a registered trademark of Thermo Fisher Scientific. Cy® is a registered trademark of Cytiva. Texas Red® is a registered trademark of Thermo Fisher Scientific. DyLight® is a trademark of Thermo Fisher Scientific.