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Tide Quencher™ 5.1 CPG [TQ5.1 CPG] *1000 Å*

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Physical properties
SolventMeCN
Storage, safety and handling
H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22
StorageFreeze (< -15 °C); Minimize light exposure
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Tide Quencher™ 7WS acid [TQ7WS acid]
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Tide Quencher™ 2 acid [TQ2 acid]
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Tide Quencher™ 3 phosphoramidite [TQ3 phosphoramidite]
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Tide Quencher™ 7.1WS acid [TQ7.1WS acid]
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OverviewpdfSDSpdfProtocol


Tide Quencher™ 5.1 (TQ5.1) is a non-fluorescent molecule designed to efficiently quench the fluorescence of common NIR fluorophores such as Cy5, Cy5.5, Alexa Fluor® 647, Alexa Fluor® 647, iFluor® 647 and iFluor® 680. It is an improved version of TQ5 and QSY 21 and BHQ3). TQ5.1 is designed to be a superior quencher with (a). much stronger absorption, and (b). much higher quenching efficiency. Tide Quencher™ 5.1 CPG is an excellent building block for preparing TQ5.1-labeled oligonucleotides. The oligo prepared from (TQ5.1 CPG) may be deprotected in 0.05M potassium carbonate in methanol for 4 hours at room temperature for 2 hours. Alternatively, the oligo may be deprotected in ammonium hydroxide at room temperature for 24-36 hours. It can be used in techniques such as polymerase chain reaction (PCR), real-time PCR, and DNA sequencing. In these applications, fluorescence signals are used to monitor the amplification or detection of specific DNA sequences. TQ5.1WS quenches the fluorescent signal until a specific event (like DNA strand separation or primer extension) occurs, leading to an increase in fluorescence that can be detected and quantified.

Product Family


NameExtinction coefficient (cm -1 M -1)Correction Factor (260 nm)Correction Factor (280 nm)
Tide Quencher™ 7.1 CPG [TQ7.1 CPG] *500 Å*75,00010.2290.193

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References


View all 17 references: Citation Explorer
Association of a vaccine adjuvant with endogenous HDL increases lymph uptake and dendritic cell activation.
Authors: Gracia, Gracia and Cao, Enyuan and Kochappan, Ruby and Porter, Christopher J H and Johnston, Angus P R and Trevaskis, Natalie L
Journal: European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft fur Pharmazeutische Verfahrenst (2022): 240-252
Construction of a single quantum dot nanosensor with the capability of sensing methylcytosine sites for sensitive quantification of methyltransferase.
Authors: Hu, Juan and Liu, Yang and Zhang, Chun-Yang
Journal: Nanoscale (2020): 4519-4526
Cytosine-5 methylation-directed construction of a Au nanoparticle-based nanosensor for simultaneous detection of multiple DNA methyltransferases at the single-molecule level.
Authors: Wang, Li-Juan and Han, Xiao and Qiu, Jian-Ge and Jiang, BingHua and Zhang, Chun-Yang
Journal: Chemical science (2020): 9675-9684
Separation-free single-base extension assay with fluorescence resonance energy transfer for rapid and convenient determination of DNA methylation status at specific cytosine and guanine dinucleotide sites.
Authors: Fujita, Keisuke and Hashimoto, Masahiko
Journal: Electrophoresis (2019): 281-288
Single quantum dot-based nanosensor for sensitive detection of 5-methylcytosine at both CpG and non-CpG sites.
Authors: Wang, Zi-Yue and Wang, Li-Juan and Zhang, Qianyi and Tang, Bo and Zhang, Chun-Yang
Journal: Chemical science (2018): 1330-1338
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Journal: BMC genomics (2017): 4
Methylated oligonucleotide (MON)-induced promoter hypermethylation is associated with repression of CDH1 expression and contributes to the migration and invasion of human trophoblast cell lines.
Authors: Lan, Xi and Fu, Li-Juan and Hu, Zhuo-Ying and Feng, Qian and Liu, Xue-Qing and Zhang, Xue and Chen, Xue-Mei and He, Jun-Lin and Wang, Ying-Xiong and Ding, Yu-Bin
Journal: Reproduction, fertility, and development (2017): 1509-1520
Developmental profiles of the murine palatal methylome.
Authors: Seelan, Ratnam S and Appana, Savitri N and Mukhopadhyay, Partha and Warner, Dennis R and Brock, Guy N and Pisano, M Michele and Greene, Robert M
Journal: Birth defects research. Part A, Clinical and molecular teratology (2013): 171-86
Single molecule in vivo analysis of toll-like receptor 9 and CpG DNA interaction.
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Detection method for methylation density on microarray using methyl-CpG-binding domain protein.
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