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Tide Quencher™ 5.1WS succinimidyl ester [TQ5.1WS SE]

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Physical properties
Molecular weight1137.43
SolventDMSO
Storage, safety and handling
H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22
StorageFreeze (< -15 °C); Minimize light exposure
Related products
Tide Quencher™ 2WS acid [TQ2WS acid]
Tide Quencher™ 2WS succinimidyl ester [TQ2WS, SE]
Tide Quencher™ 2WS maleimide [TQ2WS maleimide]
Tide Quencher™ 4WS acid [TQ4WS acid]
Tide Quencher™ 4WS amine [TQ4WS amine]
Tide Quencher™ 4 CPG [TQ4 CPG] *500 Å*
Tide Quencher™ 4 CPG [TQ4 CPG] *1000 Å*
Tide Quencher™ 4WS maleimide [TQ4WS maleimide]
Tide Quencher™ 4WS succinimidyl ester [TQ4WS SE]
Tide Quencher™ 4WS azide [TQ4WS azide]
Tide Quencher™ 4WS alkyne [TQ4WS alkyne]
Tide Quencher™ 5WS acid [TQ5WS acid]
Tide Quencher™ 5WS amine [TQ5WS amine]
Tide Quencher™ 5 CPG [TQ5 CPG] *500 Å*
Tide Quencher™ 5 CPG [TQ5 CPG] *1000 Å*
Tide Quencher™ 5WS maleimide [TQ5WS maleimide]
Tide Quencher™ 5WS succinimidyl ester [TQ5WS SE]
Tide Quencher™ 5WS alkyne [TQ5WS alkyne]
Tide Quencher™ 6WS acid [TQ6WS acid]
Tide Quencher™ 6WS amine [TQ6WS amine]
Tide Quencher™ 6WS maleimide [TQ6WS maleimide]
Tide Quencher™ 6WS succinimidyl ester [TQ6WS SE]
Tide Quencher™ 6WS azide [TQ6WS azide]
Tide Quencher™ 6WS alkyne [TQ6WS alkyne]
Tide Quencher™ 7WS acid [TQ7WS acid]
Tide Quencher™ 7WS amine [TQ7WS amine]
Tide Quencher™ 7WS maleimide [TQ7WS maleimide]
Tide Quencher™ 7WS succinimidyl ester [TQ7WS SE]
Tide Quencher™ 7WS alkyne [TQ7WS alkyne]
Tide Quencher™ 1 azide [TQ1 azide]
Tide Quencher™ 1 alkyne [TQ1 alkyne]
Tide Quencher™ 1 acid [TQ1 acid]
Tide Quencher™ 1 amine [TQ1 amine]
Tide Quencher™ 1 CPG [TQ1 CPG] *500 Å*
Tide Quencher™ 1 CPG [TQ1 CPG] *1000 Å*
Tide Quencher™ 1 maleimide [TQ1 maleimide]
Tide Quencher™ 1 phosphoramidite [TQ1 phosphoramidite]
Tide Quencher™ 1 succinimidyl ester [TQ1 SE]
Tide Quencher™ 2 acid [TQ2 acid]
Tide Quencher™ 2 amine [TQ2 amine]
Tide Quencher™ 2 CPG [TQ2 CPG] *500 Å*
Tide Quencher™ 2 CPG [TQ2 CPG] *1000 Å*
Tide Quencher™ 2 phosphoramidite [TQ2 phosphoramidite]
Tide Quencher™ 2 succinimidyl ester [TQ2 SE]
Tide Quencher™ 2 azide [TQ2 azide]
Tide Quencher™ 2 alkyne [TQ2 alkyne]
Tide Quencher™ 3 acid [TQ3 acid]
Tide Quencher™ 3 amine [TQ3 amine]
Tide Quencher™ 3 CPG [TQ3 CPG] *500 Å*
Tide Quencher™ 3 CPG [TQ3 CPG] *1000 Å*
Tide Quencher™ 3 maleimide [TQ3 maleimide]
Tide Quencher™ 3WS acid [TQ3WS acid]
Tide Quencher™ 3 phosphoramidite [TQ3 phosphoramidite]
Tide Quencher™ 3WS succinimidyl ester [TQ3WS SE]
Tide Quencher™ 3 succinimidyl ester [TQ3 SE]
Tide Quencher™ 3 azide [TQ3 azide]
Tide Quencher™ 3 alkyne [TQ3 alkyne]
Tide Quencher™ 2WS alkyne [TQ2WS alkyne]
Tide Quencher™ 4WS-DBCO [TQ4WS-DBCO]
Tide Quencher™ 5WS azide [TQ5WS azide]
Tide Quencher™ 7WS azide [TQ7WS azide]
Tide Quencher™ 5.1WS acid [TQ5.1WS acid]
Tide Quencher™ 5.1WS amine [TQ5.1WS amine]
Tide Quencher™ 5.1 CPG [TQ5.1 CPG] *500 Å*
Tide Quencher™ 5.1 CPG [TQ5.1 CPG] *1000 Å*
Tide Quencher™ 5.1WS maleimide [TQ5.1WS maleimide]
Tide Quencher™ 5.1WS azide [TQ5.1WS azide]
Tide Quencher™ 5.1WS alkyne [TQ5.1WS alkyne]
Tide Quencher™ 7.1WS acid [TQ7.1WS acid]
Tide Quencher™ 7.1WS amine [TQ7.1WS amine]
Tide Quencher™ 7.1 CPG [TQ7.1 CPG] *500 Å*
Tide Quencher™ 7.1 CPG [TQ7.1 CPG] *1000 Å*
Tide Quencher™ 7.1WS maleimide [TQ7.1WS maleimide]
Tide Quencher™ 7.1WS azide [TQ7.1WS azide]
Tide Quencher™ 7.1WS alkyne [TQ7.1WS alkyne]
Tide Quencher™ 7.2WS acid [TQ7.2WS acid]
Tide Quencher™ 7.2WS amine [TQ7.2WS amine]
Tide Quencher™ 7.2 CPG [TQ7.2 CPG] *500 Å*
Tide Quencher™ 7.2 CPG [TQ7.2 CPG] *1000 Å*
Tide Quencher™ 7.2WS maleimide [TQ7.2WS maleimide]
Tide Quencher™ 7.2WS succinimidyl ester [TQ7.2WS SE]
Tide Quencher™ 7.2WS azide [TQ7.2WS azide]
Tide Quencher™ 7.2WS alkyne [TQ7.2WS alkyne]
Tide Quencher™ 8WS acid [TQ8WS acid]
Tide Quencher™ 8WS amine [TQ8WS amine]
Tide Quencher™ 8 CPG [TQ8 CPG] *500 Å*
Tide Quencher™ 8WS maleimide [TQ8WS maleimide]
Tide Quencher™ 8WS succinimidyl ester [TQ8WS SE]
Tide Quencher™ 8WS azide [TQ8WS azide]
Tide Quencher™ 8WS alkyne [TQ8WS alkyne]
Tide Quencher™ 8 CPG [TQ8 CPG] *1000 Å*
Tide Quencher™ 3WS maleimide [TQ3 maleimide]
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OverviewpdfSDSpdfProtocol


Molecular weight
1137.43
Tide Quencher™ 5.1WS (TQ5.1WS) is a non-fluorescent molecule designed to efficiently quench the fluorescence of common NIR fluorophores such as Cy5, Cy5.5, Alexa Fluor® 647, Alexa Fluor® 647, iFluor® 647 and iFluor® 680. It is an improved version of TQ5 and QSY 21 and BHQ3). TQ5.1WS is designed to be a superior quencher with (a). much stronger absorption, and (b). much higher quenching efficiency. Tide Quencher™ 5.1WS succinimidyl ester is primarily used for the post-labeling of amino-modified oligonucleotides and the N-terminal or lysine residues of peptides. It can be used in techniques such as polymerase chain reaction (PCR), real-time PCR, and DNA sequencing. In these applications, fluorescence signals are used to monitor the amplification or detection of specific DNA sequences. TQ5.1WS quenches the fluorescent signal until a specific event (like DNA strand separation or primer extension) occurs, leading to an increase in fluorescence that can be detected and quantified. Fluorescence resonance energy transfer (FRET)-based assays are widely used to detect and measure the presence of specific molecules in a sample. They involve the use of a fluorescent molecule (fluorophore) and a quencher molecule such as TQ5.1WS. The fluorophore emits light when excited by a specific wavelength of light, while the quencher molecule absorbs this emitted light, effectively "quenching" the fluorescence signal.

Calculators


Common stock solution preparation

Table 1. Volume of DMSO needed to reconstitute specific mass of Tide Quencher™ 5.1WS succinimidyl ester [TQ5.1WS SE] to given concentration. Note that volume is only for preparing stock solution. Refer to sample experimental protocol for appropriate experimental/physiological buffers.

0.1 mg0.5 mg1 mg5 mg10 mg
1 mM87.917 µL439.587 µL879.175 µL4.396 mL8.792 mL
5 mM17.583 µL87.917 µL175.835 µL879.175 µL1.758 mL
10 mM8.792 µL43.959 µL87.917 µL439.587 µL879.175 µL

Molarity calculator

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References


View all 25 references: Citation Explorer
Single-Molecule Characterization of Cy3.5 -Cy5.5 Dye Pair for FRET Studies of Nucleic Acids and Nucleosomes.
Authors: Ghoneim, Mohamed and Musselman, Catherine A
Journal: Journal of fluorescence (2023): 413-421
Development of fluorescence-based nucleic acid blot hybridization method using Cy5.5 labeled DNA probes.
Authors: Cheng, Ying and Wang, Na and Ren, Zhenxing and Xu, Chenggang
Journal: Journal of microbiological methods (2022): 106479
Spurious CD34 expression in B-cell lymphoma due to nonspecific binding to PerCP-Cy5.5 fluorochrome conjugates: A rare phenomenon and a diagnostic pitfall.
Authors: Shi, Min and Timm, Michael M and Howard, Matthew T and Jevremovic, Dragan and Yuan, Ji and Greipp, Patricia T and Peterson, Jess F and Roh, Dana J and Horna, Pedro and Olteanu, Horatiu
Journal: Cytometry. Part B, Clinical cytometry (2022)
Synthesis and characterization of 64Cu- and Cy5.5-labeled tetraiodothyroacetic acid derivatives for tumor angiogenesis imaging.
Authors: Kim, Hyunjung and Koo, Hyun-Jung and Ahn, Jinhee and Kim, Jung Young and Choi, Joon Young and Lee, Kyung-Han and Kim, Byung-Tae and Choe, Yearn Seong
Journal: Bioorganic & medicinal chemistry (2020): 115212
pH responsible and fluorescent Cy5.5-PEG-g-A-HA/CDDP complex nanoparticles: synthesis, characterization, and application for targeted drug delivery.
Authors: Cheng, Cui and Meng, Yabin and Zhang, Zhihong and Li, Ya and Liu, Chun and Zhang, Qiqing
Journal: Journal of materials science. Materials in medicine (2019): 58
In Vivo Spinal Distribution of Cy5.5 Fluorescent Dye after Injection via the Lateral Ventricle and Cisterna Magna in Rat Model.
Authors: Lee, Kee-Hang and Nam, Hyun and Won, Jeong-Seob and Hwang, Ji-Yoon and Jang, Hye Won and Lee, Sun-Ho and Joo, Kyeung Min
Journal: Journal of Korean Neurosurgical Society (2018): 434-440
Tumoral Acidic pH-Responsive cis-Diaminodichloroplatinum-Incorporated Cy5.5-PEG- g-A-HA Nanoparticles for Targeting Delivery of CDDP against Cervical Cancer.
Authors: Cheng, Cui and Meng, Yabin and Zhang, Zhihong and Li, Ya and Zhang, Qiqing
Journal: ACS applied materials & interfaces (2018): 26882-26892
Synthesis and evaluation of Cy5.5-Rit tracer for specific near-infrared fluorescence imaging of sentinel lymph node.
Authors: Li, Nan and Zhu, Hua and Li, Yan and Wang, Jing and Yang, Zhi
Journal: Bioorganic & medicinal chemistry letters (2016): 4233-6
In vivo quantifying molecular specificity of Cy5.5-labeled cyclic 9-mer peptide probe with dynamic fluorescence imaging.
Authors: Dai, Yunpeng and Yin, Jipeng and Huang, Yu and Chen, Xueli and Wang, Guodong and Liu, Yajun and Zhang, Xianghan and Nie, Yongzhan and Wu, Kaichun and Liang, Jimin
Journal: Biomedical optics express (2016): 1149-59
Investigation of injection dose and camera integration time on quantifying pharmacokinetics of a Cy5.5-GX1 probe with dynamic fluorescence imaging in vivo.
Authors: Dai, Yunpeng and Chen, Xueli and Yin, Jipeng and Kang, Xiaoyu and Wang, Guodong and Zhang, Xianghan and Nie, Yongzhan and Wu, Kaichun and Liang, Jimin
Journal: Journal of biomedical optics (2016): 86001