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DBCO NHS Ester

Cu-free click reaction, i.e., the strain-promoted alkyne-azide cycloaddition (SPAAC) is a bioorthogonal reaction utilizing a pair of reagents, cyclooctynes and azides that exclusively and efficiently react with each other while remain inert to naturally occurring functional groups such as hydroxy, amino and thiol groups. SPAAC enables labeling a wide variety of biomolecules without any auxiliary reagents in an aqueous and otherwise complex chemical environment through the formation of a stable triazole. Among the large number of known cyclooctynes, dibenzocyclooctyne (DBCO) compounds comprise a class of reagents that possesses reasonably fast kinetics and good stability in aqueous buffers. Within physiological temperature and pH ranges, the DBCO group will not react with thiol, amino or hydroxy groups that are naturally present in many biomolecules. DBCO NHS Ester is one of the most common reagents used for introducing DBCO group into a biomolecule via the modification of the amino groups.

Calculators

Common stock solution preparation

Table 1. Volume of DMSO needed to reconstitute specific mass of DBCO NHS Ester to given concentration. Note that volume is only for preparing stock solution. Refer to sample experimental protocol for appropriate experimental/physiological buffers.

0.1 mg0.5 mg1 mg5 mg10 mg
1 mM248.503 µL1.243 mL2.485 mL12.425 mL24.85 mL
5 mM49.701 µL248.503 µL497.006 µL2.485 mL4.97 mL
10 mM24.85 µL124.251 µL248.503 µL1.243 mL2.485 mL

Molarity calculator

Enter any two values (mass, volume, concentration) to calculate the third.

Mass (Calculate)Molecular weightVolume (Calculate)Concentration (Calculate)Moles
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Product family

NameExcitation (nm)Emission (nm)Extinction coefficient (cm -1 M -1)Quantum yieldCorrection Factor (260 nm)Correction Factor (280 nm)
Cy2DIGE NHS ester4925081500000.1200.080.15
Cy3B NHS ester56057112000010.5810.0480.069
Cy3DIGE NHS ester55556915000010.1510.070.073
Cy5DIGE NHS ester65167025000010.271, 0.420.020.03
CypHer5E NHS Ester643660----
CypHer7E NHS Ester748769----
QXY21 NHS ester [equivalent to QSY-21 NHS ester]--890001--0.32
QXY7 NHS ester [equivalent to QSY-7 NHS ester]--900001--0.22
XFD350 NHS Ester34344119000-0.250.19
XFD430 NHS ester43254015,000--0.28
XFD488 NHS Ester499520710000.9210.300.11
XFD514 NHS Ester51854380000-0.310.18
XFD532 NHS Ester534553810000.6110.240.09
XFD546 NHS Ester5615721120000.7910.210.12
XFD555 NHS Ester5535681500000.110.080.08
XFD568 NHS Ester579603913000.6910.450.46
XFD594 NHS Ester590618900000.6610.430.56
XFD647 NHS Ester6506712390000.3310.000.03
XFD660 NHS Ester663691132000-0.000.10
XFD680 NHS Ester6817041840000.3610.000.05
XFD700 NHS Ester6967191920000.2510.000.07
XFD750 NHS Ester7527762400000.1210.000.04
XFD790 NHS Ester782805260,000-0.090.08
Show More (14)

Citations

View all 17 citations: Citation Explorer
High-sensitivity small-molecule detection of microcystin-LR cyano-toxin using a terahertz-aptamer biosensor
Authors: Mohamed, Ahmed and Walsh, Ryan and Cherif, Mohamed and Hafez, Hassan A and Ropagnol, Xavier and Vidal, Fran{\c{c}}ois and Perreault, Jonathan and Ozaki, Tsuneyuki
Journal: Analyst (2021): 7583--7592
The one-pot nonhydrolysis Staudinger reaction and Staudinger or SPAAC ligation
Authors: Cheng, L., Kang, X., Wang, D., Gao, Y., Yi, L., Xi, Z.
Journal: Org Biomol Chem (2019): 5675-5679
Optimization of Chemoenzymatic Mass Tagging by Strain-Promoted Cycloaddition (SPAAC) for the Determination of O-GlcNAc Stoichiometry by Western Blotting
Authors: Darabedian, N., Thompson, J. W., Chuh, K. N., Hsieh-Wilson, L. C., Pratt, M. R.
Journal: Biochemistry (2018): 5769-5774
Highly reactive bis-cyclooctyne-modified diarylethene for SPAAC-mediated cross-linking
Authors: Strizhak, A. V., Sharma, K., Babii, O., Afonin, S., Ulrich, A. S., Komarov, I. V., Spring, D. R.
Journal: Org Biomol Chem (2018): 8559-8564
Fused Bicyclic Caspase-1 Inhibitors Assembled by Copper-Free Strain-Promoted Alkyne-Azide Cycloaddition (SPAAC)
Authors: Qian, L., Zhang, C. J., Wu, J., Yao, S. Q.
Journal: Chemistry (2017): 360-369
Page updated on August 16, 2025

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Physical properties

Molecular weight

402.41

Solvent

DMSO

Storage, safety and handling

Intended useResearch Use Only (RUO)

Storage

Freeze (< -15 °C); Minimize light exposure

CAS

1353016-71-3
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