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AAT Bioquest

XFD647 TCO

Product key features

  • Ex/Em: 650/671 nm
  • Extinction coefficient: 270,000 cm-1M-1
  • Reactive Group: TCO
  • Click Chemistry Conjugation: Provides rapid, copper-free labeling of tetrazine-modified biomolecules
  • Bright & Stable: Delivers intense fluorescence with resilience to photobleaching and pH variations from 4 to 10
  • Hydrophilic: Minimizes aggregation, enhancing signal clarity for advanced imaging and live-cell studies

Product description

XFD647, manufactured by AAT Bioquest, is a bright far-red flurosecent dye structurally identical to Alexa Fluor™ 647 (ThermoFisher). It is efficiently excited by the 594 nm or 633 nm laser lines and is compatible with RFP filters like Cy5, making it well-suited for applications such as fluorescence microscopy and flow cytometry. XFD647 exhibits excellent aqueous solubility and pH stability across a wide range (pH 4–10), ensuring robust signal reproducibility under diverse experimental conditions. The dye enables high-degree conjugation to biomolecules with minimal self-quenching, resulting in enhanced fluorescence intensity and signal stability. Additionally, its high fluorescence quantum yield and superior photostability facilitate the sensitive detection of low-abundance targets, enhancing precision and sensitivity in quantitative fluorescence-based assays.

XFD647 TCO is particularly useful for labeling tetrazine-modified biomolecules under copper-free conditions. It reacts with tetrazine-functionalized molecules, forming a stable conjugate via a dihydropyrazine moiety. This click reaction is favored over others due to its extremely fast kinetics and higher yields under mild reaction conditions, making it a popular choice for researchers.

Spectrum

Product family

NameExcitation (nm)Emission (nm)Extinction coefficient (cm -1 M -1)Quantum yieldCorrection Factor (260 nm)Correction Factor (280 nm)
XFD488 TCO499520730000.9210.30.11
XFD555 TCO5535681500000.110.080.08
XFD635 TCO633647140,000---
XFD647 acid6506712700000.331-0.03
XFD647 Alkyne6506712700000.331-0.03
XFD647 amine6506712700000.331-0.03
XFD647 Azide6506712700000.331-0.03
XFD647 Tetrazine6506712390000.3310.000.03
XFD680 TCO6817041840000.3610.000.05
XFD700 TCO6967191920000.2510.000.07
XFD750 TCO7527762400000.1210.000.04
XFD790 TCO782805260,000-0.090.08
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References

View all 45 references: Citation Explorer
Cell Labeling with 15-YNE Is Useful for Tracking Protein Palmitoylation and Metabolic Lipid Flux in the Same Sample.
Authors: Merz, Nadine and Schilling, Karin and Thomas, Dominique and Hahnefeld, Lisa and Grösch, Sabine
Journal: Molecules (Basel, Switzerland) (2025)
Folding and Functionalizing DNA Origami: A Versatile Approach Using a Reactive Polyamine.
Authors: Postigo, Alejandro and Marcuello, Carlos and Verstraeten, William and Sarasa, Santiago and Walther, Tobias and Lostao, Anabel and Göpfrich, Kerstin and Del Barrio, Jesús and Hernández-Ainsa, Silvia
Journal: Journal of the American Chemical Society (2025): 3919-3924
Potent Immunomodulators Developed from an Unstable Bacterial Metabolite of Vitamin B2 Biosynthesis.
Authors: Mak, Jeffrey Y W and Rivero, Ryan J D and Hoang, Huy N and Lim, Xin Yi and Deng, Jieru and McWilliam, Hamish E G and Villadangos, Jose A and McCluskey, James and Corbett, Alexandra J and Fairlie, David P
Journal: Angewandte Chemie (International ed. in English) (2024): e202400632
Hoechst modification by strain-promoted azide-alkyne cycloaddition for transport of functional molecules into the cell nucleus.
Authors: Makanai, Hiroki and Mochizuki, Daisuke and Nishihara, Tatsuya and Tanabe, Kazuhito
Journal: Bioorganic & medicinal chemistry letters (2024): 129916
Development of Prodrug-Payloads for Targeted Therapeutic Applications of Platinum-Acridine Anticancer Agents.
Authors: Mancera-Ortiz, Ikeer Y and Chen, Jiangxue and Slade, Tyler A and Yao, Xiyuan and Zhang, Shenjie and Day, Cynthia S and Bierbach, Ulrich
Journal: Bioconjugate chemistry (2023): 1873-1881
Page updated on May 19, 2025

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Catalog Number1735
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Physical properties

Molecular weight

1370.89

Solvent

DMSO

Spectral properties

Correction Factor (260 nm)

0.00

Correction Factor (280 nm)

0.03

Extinction coefficient (cm -1 M -1)

239000

Excitation (nm)

650

Emission (nm)

671

Quantum yield

0.331

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Freeze (< -15 °C); Minimize light exposure
UNSPSC12171501
Schematic illustrating the strain‐promoted inverse‐electron‐demand Diels–Alder (iEDDA) reaction between a trans‐cyclooctene (TCO)–dye conjugate and a tetrazine‐modified biomolecule. The TCO–dye adduct selectively and rapidly couples with the tetrazine moiety on the biomolecule to form a stable linkage. This bioorthogonal “click chemistry” reaction is fast, selective, and well‐suited for biocompatible labeling applications.
Schematic illustrating the strain‐promoted inverse‐electron‐demand Diels–Alder (iEDDA) reaction between a trans‐cyclooctene (TCO)–dye conjugate and a tetrazine‐modified biomolecule. The TCO–dye adduct selectively and rapidly couples with the tetrazine moiety on the biomolecule to form a stable linkage. This bioorthogonal “click chemistry” reaction is fast, selective, and well‐suited for biocompatible labeling applications.
Schematic illustrating the strain‐promoted inverse‐electron‐demand Diels–Alder (iEDDA) reaction between a trans‐cyclooctene (TCO)–dye conjugate and a tetrazine‐modified biomolecule. The TCO–dye adduct selectively and rapidly couples with the tetrazine moiety on the biomolecule to form a stable linkage. This bioorthogonal “click chemistry” reaction is fast, selective, and well‐suited for biocompatible labeling applications.